Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq17409 102 3e-17 >seq17409 Length=41676 Score = 102 bits (112), Expect = 3e-17 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 5615 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 5674 || ||||||||||| ||||||| ||| ||||| ||||| || |||||||| ||||||||| Sbjct 36629 GACGAGTTCGACTACGGCTATGTGCTGACCGTGCACAAATCCCAGGGCTCGCAGTGGAAC 36688 Query 5675 AACGTCCTGCTGTTTGACGAGTGGTACG---GGAAGGA---CCGGAAGGAATGGCTGTAC 5728 ||||| ||||||| ||||| | | || |||| ||| | ||||| ||| Sbjct 36689 GACGTCGTGCTGTTCGACGAAAGCTTCGCCTTCCAGGACAGCCGCGCGCGCTGGCTCTAC 36748 Query 5729 ACCGCCATTACCCGGGCCGCGGAACG 5754 |||| ||| ||||| |||||| |||| Sbjct 36749 ACCGGCATCACCCGCGCCGCGAAACG 36774 Score = 89.7 bits (98), Expect = 2e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 4648 GCCCGTGTTCCAGCTCGCCGGGTACGCCGGAACCGGCAAGACCACCCTGGCCAAACACCT 4707 ||||||||||| ||| ||| || ||||| |||||||||||||||||||| || | Sbjct 35770 GCCCGTGTTCCGGCTGTTCGGCTATGCCGGCACCGGCAAGACCACCCTGGCGCGGCATAT 35829 Query 4708 CGCCGCGACCGTCAACGGTCCCGTGTACTTTGCCGCCTACACCGGCAAGGCCGC 4761 || | | ||||||||| ||||| | | || |||| ||||||||||||||| Sbjct 35830 TGCGGAGGGCGTCAACGGCACCGTGAAATACGCGGCCTTCACCGGCAAGGCCGC 35883 Score = 80.6 bits (88), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 5066 TTCGGTTGCCCGATCCTCGCCCTGGGCGATCCGGGGCAGCTCCCGCCCGT---GGGCGGC 5122 |||| |||||| | || | ||||||||||||| |||| | ||||| | ||||||| Sbjct 36074 TTCGATTGCCCCTTGCTGGTGCTGGGCGATCCGGCGCAGTTGCCGCCGATCCAGGGCGGC 36133 Query 5123 ACCCCCTTCTTCAAGAACAAGCCCGACATCCTGCTCACGGAGATTCACCGCCAGGCCCAG 5182 | ||| | | | |||| || ||||||| || | ||||| ||||| ||| Sbjct 36134 GGCTTTTTCACCGATGCCGAGCCGGATGCGATGCTCACCGAAGTGCACCGTCAGGCGCAG 36193 Query 5183 GACAACCCGATCATCTGGATGTCCAAGGAGGTCCGCGAGGGCCGC 5227 ||| |||| ||| | ||||||| | || ||| |||||||||||| Sbjct 36194 GACGACCCCATCGTGCGGATGTCGATGGCGGTGCGCGAGGGCCGC 36238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164757330963750