Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq89744 104 2e-17 seq59164 96.9 3e-15 seq76002 84.2 2e-11 >seq89744 Length=19024 Score = 104 bits (114), Expect = 2e-17 Identities = 194/284 (68%), Gaps = 1/284 (0%) Strand=Plus/Plus Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || || |||||||| ||||| || | || || ||| | |||| ||||| | | || Sbjct 15201 GGAACAAATGGCACATCCAATGGTATTGTGCCAATGTTGAGGGTATTCAATGATACTGCT 15260 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 || || || || || ||||| |||| |||||||||| | || || | || | || || Sbjct 15261 CGATATGTTGATCAAGGTGGAGGGAAGAGGAAGGGTGCCTTTGCCATGTACTTAGATCCA 15320 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 ||||| || || | | |||| | || || | |||||||| || || || | Sbjct 15321 TGGCATGCAGATTTTTTGAGTTTC-TGGAGTTGAGGAAGAACCATGGGAAGGAAGAAAAC 15379 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 ||||| | || || || | || || ||||||||| | || ||||||||| | ||| || Sbjct 15380 AGGGCATGTGATCTGTTTTTTGCGCTTTGGGTGCCAAAACTCTTTATGAAAAGGGTCCAG 15439 Query 94321 AAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 | || || | ||| | |||||||||||||||| ||| || Sbjct 15440 GAGAATTCTACATGGTCATTGTTTTGTCCCAATGAATCTCCTGG 15483 >seq59164 Length=25038 Score = 96.9 bits (106), Expect = 3e-15 Identities = 195/288 (68%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 ||| || || |||||||| ||||| || |||| || ||| | |||| ||||| | | Sbjct 3813 CCGAGGAACAAATGGCACATCCAATGGTATCGTGCCAATGTTGAGGGTATTCAATGATAC 3754 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 || | || || || || ||||| || | |||||||||| | || | | || | || Sbjct 3753 TGCTTGATATGTTGATCAAGGTGGAGGCAAGAGGAAGGGTGCCTTTTCCATGTACTTAGA 3694 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 || ||||| || | | | |||| | || || | |||||||| || || || Sbjct 3693 TCCATGGCATGCATATTTTTTGAGTTTC-TGGAGTTGAGGAAGAACCATGGGAAGGAAGA 3635 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 | ||||| | || || || | || || ||||||||||| || ||||||||| | || Sbjct 3634 AAACAGGGCATGTGATCTATTTTTTGCGCTTTGGGTGCCAGAACTCTTTATGAAAAGGGT 3575 Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 | || | || || | ||| | |||||||||||||||| ||| || Sbjct 3574 CTAGGAGAATTCTACATGGTCATTGTTTTGTCCCAATGAATCTCCTGG 3527 >seq76002 Length=21272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/291 (66%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 ||| || || |||||||| ||||| || | || || ||| | |||| ||||| | Sbjct 19167 CCGAGGAACAAATGGCACATCCAATGGTATTGTGCCAATGTTGAGGGTATTCAATGATTT 19226 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 | || || || || || ||||| || | |||||||||| | || | | || | || Sbjct 19227 TTCTCGATATGTTGATCAAGGTGGAGGCAAGAGGAAGGGTGCCTTTTCCATGTACTTAGA 19286 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 | | ||||| || || || | || | || || | |||||||| || || || Sbjct 19287 GACATGGCATGCAGATGTTTTTGAGTTTCTGGAGTTGAGGAAGAACCATGGGAAGGAAGA 19346 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 | ||| | | || || || | || || |||||||||||||| ||||||||| | || Sbjct 19347 AAACAGGACACGTGATCTGTTTTTTGCACTTTGGGTGCCAGACCTCTTTATGAAAAGGGT 19406 Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 || | || || | ||| | ||||||||||||||| ||| || || Sbjct 19407 ATAGGAGAATTCTACATGGTCATTGTTTTGTCCCAATGAAGCTCCTGGTCT 19457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432901971578790