Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_012584.1 Length=30570 Score E Sequences producing significant alignments: (Bits) Value seq416950 226 5e-55 >seq416950 Length=5269 Score = 226 bits (250), Expect = 5e-55 Identities = 509/751 (68%), Gaps = 19/751 (3%) Strand=Plus/Plus Query 5383 CCATAGAGGGCATTGCTTAACAGTTTTGCTATACTTCTCATCACCATAtttttttGTTTG 5442 ||||| | ||| ||| | || || ||||| |||| ||| || |||| |||| Sbjct 1397 CCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTTTGGTTCTTTTCTTTG 1456 Query 5443 TCTGCTCTTTCTTTTGCTGCGATATTGATAGTAACATAGGTTCTTA--CAAGACATTTCA 5500 |||||| ||||||| ||| |||| || | || || ||||| | | || ||| Sbjct 1457 TCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTA--TTCTTTGGCCACGCACTTCC 1514 Query 5501 TTTGTGGAAATAGGGTAGTTCGGTCTTCAGGTAAGATTTTTACTTTCCATCCTCGGTTGT 5560 | ||| || | ||| |||| || || || | || ||| |||||||| ||||| Sbjct 1515 ACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCATCCTCTGTTGT 1574 Query 5561 GGAGTGTAATGACGTCAATTGTTGTTGCTACCTCTCCCCGTAAGGTTTCATTGGTCCAGC 5620 | | ||||| | ||| || | || ||||| ||||| || || | || || ||||||| Sbjct 1575 GCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCGTTAGTCCAGC 1634 Query 5621 ATAATCTTCCTCCTTTTCTACTGCAAAATGGAGGCAGGACGTCTAAGTCTTTTTCAGAGG 5680 | | ||||| |||||||| |||||| |||||||| | || | || | Sbjct 1635 ACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGAAACAACTCGTCTG 1694 Query 5681 GGGGATCTGCATCTATGAGCACAATGCCGTGAAGCAAATGACT-GTCAAAGTAACTTAAT 5739 | ||||| || || ||| | |||||| |||| | | ||| |||||| || | ||| Sbjct 1695 GAGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGAC-ACTCGTCAAAATAG-TCAAT 1752 Query 5740 TTTTCCCTTTGAGA----AAGTTTTATTTGCCAGTTCTCTAG-AGCTTCGGCTCGTGCTT 5794 |||| || | || ||| ||| | ||| |||| | | |||| ||||| | | | Sbjct 1753 TTTTTGCTCTAAGTTTTCAAGCTTTCTGATCCA-TTCTGTCGCAGCTAAGGCTCTTTCAT 1811 Query 5795 TTGGATCTAAAGGCCAGCCTGTTGGCATGGGATGAGTTAAAGCAGAAGCATACATGCCAC 5854 |||| ||||||| || | || | ||||| |||| |||| ||||||||||| | Sbjct 1812 ACGGATTTAAAGGCTGCCCGCTGGGAAAAGGATGCGTTAGAGCACTGGCATACATGCCGC 1871 Query 5855 AGATGTCATATACATAGATAGGTTCTGTAACTTCT--CCTAGATAAGTAGGGTAGCAACG 5912 |||||||||| ||||| || || |||| | | || | |||||| || ||||| || Sbjct 1872 AGATGTCATACACATAAATTGG--CTGTTCCATGATGCCAATATAAGTGGGATAGCAGCG 1929 Query 5913 TCCTCCTCGAATGCTTTGGCGCACAAAGTCATACATTTCCCTTGAAGGAGCTAGCAGACA 5972 || || || ||||| ||||| || ||||||||||||| || || |||| | | Sbjct 1930 ACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGGTGCTAATAAAAC 1989 Query 5973 ATTGTGAAAATTTGGTTTTCCTGGTCTTTGTTCGGTATATAAGGTTTGCTTAAATATTGC 6032 |||| || |||| ||| ||| || ||| | ||||| |||||||||| ||||| Sbjct 1990 GTTGTCTAAGTTTGCTTTATTTGGCCTAACTTCTCTGTATAATATTTGCTTAAAAATTGC 2049 Query 6033 ATGAGAGTTGGCACTTATAGTTGGTCGTTGAAAGATATTAAATGAA-CACTTTGGAAGTT 6091 ||||||||| | || ||||| |||| |||||| || ||||||||| || | ||||| Sbjct 2050 ATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATGTTAAATGAAGCATCAGGTAAGTT 2109 Query 6092 GAACTTCAGTTTGAATGAATTTTTTGTAAGA 6122 |||| || ||| || ||||||||||| Sbjct 2110 -CACTTGAGAAGCAATAAAGTTTTTGTAAGA 2139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 86121785430905