Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_015225.1 Length=35499 Score E Sequences producing significant alignments: (Bits) Value seq416950 221 2e-53 seq1393656 143 5e-30 >seq416950 Length=5269 Score = 221 bits (244), Expect = 2e-53 Identities = 497/738 (67%), Gaps = 14/738 (2%) Strand=Plus/Plus Query 5951 GGCATGACGTCGGCGCTCAGGGTGTCAGTTTCCACGAACGAGGAGGATTTGATGTTGACC 6010 ||||| | || || || | | |||||||||| | ||| || || ||||||||| | Sbjct 1250 GGCATAATTTCAGCACTAAAGTTGTCAGTTTCTATGAATGATGAAGATTTGATGGAAAAG 1309 Query 6011 TGCCCGGCGGCGATGCCTTTGAGGAGGGCGGGGTCC-ATCTGGTCGGCAAAGACAATCTT 6069 | || ||||||| ||| | | || || | | | ||||| | ||| ||||| || Sbjct 1310 TTACCTCTGGCGATGGTTTTT-GACGCGCTGGCTTCTAGTTGGTCTGAAAACACAATTTT 1368 Query 6070 TTTGTTGTCGAGCTTGGTGGCGAAGGACCCGTAGAGGGCGTTGGAGAGCAGCTTGGCGAT 6129 ||||||||| | || ||||| ||| || || | ||||||||| || ||||| || || Sbjct 1369 TTTGTTGTCCAATTTAGTGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTAT 1428 Query 6130 GGAGCGCAGGGTCTGGTTCTTGTCGCGGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTG 6189 | |||| ||| |||||||| || ||| || || ||||| ||||||| ||||| Sbjct 1429 GCTTCGCATGGTTTGGTTCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTG 1488 Query 6190 CACGTACTCGCGCGCCAGGCAGCGCCATCGAGGAAAGACGGTGGTGCGCTCGTCGGGCAG 6249 |||||| || |||| ||| ||| || |||| ||| || | ||||| || || Sbjct 1489 CACGTATTCTTTGGCCACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAG 1548 Query 6250 GAGGCGCACGCGCCAGCCGCGGTTGTGCAGGGTGACCAGGTCGACGCTGGTGGCGACCTC 6309 | |||||| ||| || | |||||||| || | || ||| | || || || || Sbjct 1549 AATGCGCACTGCCCATCCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTC 1608 Query 6310 GCCGCGCAGGCGCTCGTTGGTCCAGCAGAGGCGCCCGCCCTTGCGCGAGCAGAAGGGGGG 6369 || |||| ||||||| |||||||| || | ||||| || | ||||| || || || Sbjct 1609 TCCTCGCAAAGGCTCGTTAGTCCAGCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGG 1668 Query 6370 CAGCACGTCGAGCTGGTCCTCGGGCGGCGGGTCGGCGTCCACGGTGAAGATGCCGGGCGG 6429 ||| | || || |||| || || || ||||| | |||||| ||||| || | Sbjct 1669 CAGTTCATCAAGAAACAACTCGTCTGGAGGATCCGCGTCGATGGTGAAAATGCCTGGAAG 1728 Query 6430 CAGGCGGGGGTTAAAGTAGTCAATGGGCGTTTG---TGAGTCGTCCAGGGCGCGCTG--C 6484 || | || ||| |||||||| |||| | ||| || | || ||| | Sbjct 1729 AAGACACTCGTCAAAATAGTCAAT---TTTTTGCTCTAAGTTTTCAA--GCTTTCTGATC 1783 Query 6485 CAGTTCCG-GGCGGCCAGCGCCCGCTCGTAGGGGTTGAGCGGCGGCCCCCAGGGCATGGG 6543 || ||| | || || | || | || || || || | ||| |||| | ||| | || Sbjct 1784 CA-TTCTGTCGCAGCTAAGGCTCTTTCATACGGATTTAAAGGCTGCCCGCTGGGAAAAGG 1842 Query 6544 GTGGGTGAGGGCCGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCCTCGAG 6603 || || || || ||| ||||||||||||||||| || || || | |||| || | Sbjct 1843 ATGCGTTAGAGCACTGGCATACATGCCGCAGATGTCATACACATAAATTGGCTGTTCCAT 1902 Query 6604 GACGCCGATGTAGGTGGGGTAGCAGCGGCCGCCGCGGATGCTGGCGCGCACGTAGTCGTA 6663 || ||| || || ||||| |||||||| || || |||||||| ||| |||||||| || Sbjct 1903 GATGCCAATATAAGTGGGATAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTCATA 1962 Query 6664 CATCTCGTGCGAGGGGGC 6681 ||| || || || || || Sbjct 1963 CATTTCATGAGATGGTGC 1980 Score = 145 bits (160), Expect = 2e-30 Identities = 379/574 (66%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 8571 GCGGTTGAGGTCCTGGATCTGCCTCCTCTGCGTCAAGACCACGGGTCCCGTGAGCTTGAA 8630 |||||||| || ||| |||| || | | || ||||| || || || | |||| Sbjct 3690 GCGGTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGTCACTCTGAA 3749 Query 8631 CCTGAAAGAGAGTTCGACAGAGTCAACCTCGGCGTCGTTCATGGCGGCCTGCCGCAGGAT 8690 ||||||||| | ||| | |||||||| || ||||| || | || | ||| | || Sbjct 3750 CCTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAAT 3809 Query 8691 CTCCTGGACGTCGCCCGAGTTGTCCTGGTAGGCGATCTCGGCCATGAACTGCTCGACCTC 8750 ||| ||||| || ||| || || || || || || ||||| |||||||| | ||| Sbjct 3810 CTCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCAATCTC 3869 Query 8751 CTCTTCCTGGAGTTCGCCGCGGCCGGCGCGCTCGACGGTGGCGGCCAGGTCGTTGGAGAT 8810 || | || | || || | || || | ||| || ||||| |||| ||| || || Sbjct 3870 TTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATGCTAAT 3929 Query 8811 GCGGTTCATGAGCTGAGAGAAGGC--GTTCAGCCCGGTCTCGTTCCAGACGCGGCTGTAG 8868 ||| ||||| | | || || |||| ||| | || ||||| || | |||||| Sbjct 3930 GCGAGACATGATGTTACTAAAAGCCTGTTC--CCCATTTTCATTCCACACTCTGCTGTAC 3987 Query 8869 ACCACGTCGCCCTCGGCGTCGCGCGCGCGCATGACGACCTGCGCCAGGTTGAGCTCGACG 8928 || | | || || ||| | || | ||| || ||||||||||| || ||| || Sbjct 3988 ACAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCATCACA 4047 Query 8929 TGCCGCGCGAAGACGGCGTAGTTGCGC--AGGCGCTGGAAGAGGTAGTTGAGGGTGGTGG 8986 | | | | || || | || | | | | | || | |||||| || ||||| | Sbjct 4048 TATCTCCCAAAA--GGGGAAGATACCCTAATTTGGTGATTTAAGTAGTTTAGTGTGGTAG 4105 Query 8987 CCACGTGCTCGGAGACGAAAAAGTACATGATCCAGCGGCGGAGCGTGAGCTCGTTGACGT 9046 | | ||| || | || |||||| |||| | |||||| |||| || || || | || Sbjct 4106 CAATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTAATGT 4165 Query 9047 CGCCCAGCGCTTCCAGGCGTTCCATGGCCTCGTAAAAGTCTACCGCAAAGTTAAAAAACT 9106 | || ||||| |||| || | || |||| ||||| | ||| |||||||||||||||| Sbjct 4166 CACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAAAACT 4225 Query 9107 GCGAGTTGCGCGCCGACACCGTGAGCTCCTCCTC 9140 || ||| | || ||||| |||||||| || || Sbjct 4226 GCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTC 4259 Score = 113 bits (124), Expect = 9e-21 Identities = 227/337 (67%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 5498 gggTCAAAAACGAGGCGGCCGCCGTGTTTTTTGATGCGTTTCTTACCTCGGGTCTCCATG 5557 || |||||||| || || || | ||| || ||||| | ||||||| ||||||| Sbjct 821 GGATCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCCATG 880 Query 5558 AGGCGGTGTCCGGCTTCGGTGACGAAGAGGCTGTCGGTGTCGCCGTAGACGGACTTGAGG 5617 || ||||| || ||||||| || || | |||||| ||||| |||||||| || || | Sbjct 881 AGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTTATA 940 Query 5618 GGGCGTCGCTCGAGCGGCGTGCCGCGGTCCTCCGCGTAGAGAAACTCGGACCACTCTGAG 5677 | | | | || ||| | || | ||| || ||||| | ||| || | |||||| || Sbjct 941 GTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCAGAC 1000 Query 5678 ACGAAGGCCCGCGTCCAGGCGAGGACGAAGGAGGCCACGTGGGAGGGGTAGCGGTCGTTG 5737 || || | | |||||||| | || || || || | |||||| | ||| | || ||| Sbjct 1001 ACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTGTTT 1060 Query 5738 TCCACCAGCGGGTCCGTTTTTTCGACGGTGTGCAGGCAAAGGTCCCCCTCCTCCGCGTCC 5797 || | | || | ||||| | ||||| | ||| | ||| | || || | || Sbjct 1061 TCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTTTCT 1120 Query 5798 AGGAAGGTGATTGGCTTGTAGGTGTAGGCCACGTGAC 5834 | || ||||||||||| || | || | |||||||| Sbjct 1121 AAAAACGTGATTGGCTTATACTTATATGTCACGTGAC 1157 >seq1393656 Length=1543 Score = 143 bits (158), Expect = 5e-30 Identities = 358/540 (66%), Gaps = 8/540 (1%) Strand=Plus/Plus Query 8605 AAGACCACGGGTCCCGTGAGCTTGAACCTGAAAGAGAGTTCGACAGAGTCAACCTCGGCG 8664 || ||||| || || || | ||||||||||||| | ||| | |||||||| || ||| Sbjct 32 AATACCACTGGGCCGGTCACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCG 91 Query 8665 TCGTTCATGGCGGCCTGCCGCAGGATCTCCTGGACGTCGCCCGAGTTGTCCTGGTAGGCG 8724 || || | || | ||| | ||||| ||||| || ||| || || || || Sbjct 92 TCATTAACTGCCACTTGCTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCT 151 Query 8725 ATCTCGGCCATGAACTGCTCGACCTCCTCTTCCTGGAGTTCGCCGCGGCCGGCGCGCTCG 8784 || || ||||| |||||||| | ||| || | || | || || | || || | ||| Sbjct 152 ATTTCTGCCATAAACTGCTCAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCA 211 Query 8785 ACGGTGGCGGCCAGGTCGTTGGAGATGCGGTTCATGAGCTGAGAGAAGGC--GTTCAGCC 8842 || ||||| |||| ||| || ||||| ||||| | | || || |||| || Sbjct 212 ACTGTGGCAGCCAAGTCAATGCTAATGCGAGACATGATGTTACTAAAAGCCTGTTC--CC 269 Query 8843 CGGTCTCGTTCCAGACGCGGCTGTAGACCACGTCGCCCTCGGCGTCGCGCGCGCGCATGA 8902 | | || ||||| || | |||||| || | | || || ||| | || | ||| | Sbjct 270 CATTTTCATTCCACACTCTGCTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTA 329 Query 8903 CGACCTGCGCCAGGTTGAGCTCGACGTGCCGCGCGAAGACGGCGTAGTTGCGC--AGGCG 8960 | ||||||||||| || ||| || | | | | || || | || | | | | | Sbjct 330 CTACCTGCGCCAGATTAAGCATCACATATCTCCCAAAA--GGGGAAGATACCCTAATTTG 387 Query 8961 CTGGAAGAGGTAGTTGAGGGTGGTGGCCACGTGCTCGGAGACGAAAAAGTACATGATCCA 9020 || | |||||| || ||||| || | ||| || | || |||||| |||| | ||| Sbjct 388 GTGATTTAAGTAGTTTAGTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCA 447 Query 9021 GCGGCGGAGCGTGAGCTCGTTGACGTCGCCCAGCGCTTCCAGGCGTTCCATGGCCTCGTA 9080 ||| |||| || || || | ||| || ||||| |||| || | || |||| || Sbjct 448 GCGTTGGAGAGTTGTTTCATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATA 507 Query 9081 AAAGTCTACCGCAAAGTTAAAAAACTGCGAGTTGCGCGCCGACACCGTGAGCTCCTCCTC 9140 ||| | ||| |||||||||||||||||| ||| | || ||||| |||||||| || || Sbjct 508 AAAATTTACAGCAAAGTTAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTC 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99658161420990