Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq76002 208 7e-49 seq89744 163 3e-35 seq59164 156 4e-33 seq177539 111 2e-19 seq2663879 102 8e-17 >seq76002 Length=21272 Score = 208 bits (230), Expect = 7e-49 Identities = 628/966 (65%), Gaps = 5/966 (1%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 ||||| ||| | ||| |||||| | | ||||| || | | || ||||| | | | Sbjct 19746 ACAAATCTAGACAATGCAATAGATACCAAGTTACAGACTGTTGTTTCTGTTGGACTTGAA 19687 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984 |||| || || | | || || ||| | ||||||| || |||| |||||| ||||| Sbjct 19686 TATTCAATAATATTTGTGCAGAGGTTAGAAGATTTGATGGTTCCCAGATTTTGCTGATTT 19627 Query 47985 TTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 | |||||||| | ||||||| | ||||| | || || |||||||||||||| Sbjct 19626 CTTTTATTGTTACAGGTGTCCTTGAAGAGCATGTATGGATTTAATTTTTCTATCTGAGAT 19567 Query 48045 TCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGT 48104 || | | ||| ||||| || ||| || ||| | | || ||| | | Sbjct 19566 TCCAGAACAGAAAACCAAAGCTTCTGTTCCTGTACAACCTTTTTTGCCTTACCCTATGGC 19507 Query 48105 TCGTATTTAGTATATAACTTCTCAAAT-TCATC--CCCATACACATTATCTAACCCAGGA 48161 || ||||| | || | || ||||| || || |||| |||| | | | | |||||| Sbjct 19506 TCATATTTCATGTACAGTTTTTCAAAAATCTTCAGCCCA-ACAC-TCAGCAAGACCAGGA 19449 Query 48162 CATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATA 48221 |||||| ||||| | ||||||||| || | | ||| || ||||||| | Sbjct 19448 GCTTCATTGGGACAAAACAATGACCATGTAGAATTCTCCTATACCCTTTTCATAAAGAGG 19389 Query 48222 TCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTC 48281 ||||| | |||||| || | ||| | ||| | || || |||||| || ||| ||| Sbjct 19388 TCTGGCACCCAAAGTGCAAAAAACAGATCACGTGTCCTGTTTTCTTCCTTCCCATGGTTC 19329 Query 48282 CTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 | | | || ||||| || | | ||| |||||||||| ||||| || || | | Sbjct 19328 TTCCTCAACTCCAGAAACTCAAAAACATCTGCATGCCATGTCTCTAAGTACATGGAAAAG 19269 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 |||| | || || |||||||| | ||||| | | || || | || || Sbjct 19268 GCACCCTTCCTCTTGCCTCCACCTTGATCAACATATCGAGAAAAATCATTGAATACCCTC 19209 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 |||||||| ||||||||||| ||| | ||||| ||||| ||||||| ||| | || Sbjct 19208 AACATTGGCACAATACCATTGGATGTGCCATTTGTTCCTCGGGTATAACTACCAGTTGCA 19149 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 | || ||| | | ||| ||| | || || || ||| ||||| | |||| Sbjct 19148 CGAATGTTATGCACTTAAACACCAAGTCCTCCAGCTGATTTTCTTATTACAACACATTCC 19089 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || |||||||| || || || || ||||||| | |||| | ||||| ||||| Sbjct 19088 TTTAGAGTATCATATATCCCCTCGATGCTATCATATTTCATGCAAACAAGAAAGAAACTA 19029 Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641 | ||| || | || | | ||| || | ||| ||||| ||||| | ||||| Sbjct 19028 CTGAATTGTGGCCTCGATGTCCAAGTATTGAAAAGTGTAGGAGAAGCATGGGTTAACCAA 18969 Query 48642 TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCT 48701 | ||| | || | || |||| ||| | ||||| || || | ||| || ||| Sbjct 18968 CGTTGTGACATTAAATGGTAAGTTTTGATAGCTGAATCAATGTCATTCTTATGAATCCCT 18909 Query 48702 ATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAA 48761 | | || | ||||||||||| ||||| || |||| || ||| |||| ||| Sbjct 18908 ACAACAACCCTCATTAACATATGCTGAGGCCTCTCAATAACAACTCCATTGTTTTTTAAA 18849 Query 48762 AGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTA 48821 ||||| ||| | |||| ||| ||||||||||| |||| || ||| || |||||| Sbjct 18848 AGATACGATCTCTCCAGTGTCTTAAAACCAAAGTAGTCATAATCAAAATCCCTATCATAG 18789 Query 48822 ATAATT 48827 || ||| Sbjct 18788 ATGATT 18783 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||||| ||||||| || | || || |||||||| ||||||||| Sbjct 2817 CCACCTTGATCAACATATCGAGCAGTATCATTGAATACCCTCAACATTGGCACAATACCA 2758 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| |||||||| | | || | || ||| | |||| Sbjct 2757 TTCGATGTGCCATTTGTTCCTCGGATATAACTACTGGTTGCACGAATGTTATGCACTGAA 2698 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| | || || || ||| ||||| ||| | || || |||||||| || Sbjct 2697 ACACCAAGTCCTCCAGCTGATTTGCTTATTACAGCCAATTCCTTTAGAGTATCATATATC 2638 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || ||||||||| |||| Sbjct 2637 CCTTCAATGCTATCATCTTTCAT 2615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| | ||||| | ||| | ||| | Sbjct 2371 GTCCCAGCATTGAAAAGAGTAGGAGAAGCATGGGTGAACCAACGTTGTGACATCAAATGG 2312 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 || |||| ||| | ||||| | ||| | ||| || |||| || || | ||||||| Sbjct 2311 TAAGTTTTGATAGCTGAATCAACATCATTCTTATGGATCCCTACAGCAACCCTCATTAAC 2252 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 |||| |||||| || |||| || ||| ||| |||||||| ||| | |||||| Sbjct 2251 ATATGTTGAGGCCTCTCAATAACAACTCCATTGTCTTTTAAAAGATACGATCTCTCCAAT 2192 Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 || ||||||||||| |||| ||| ||| || |||||| || ||| Sbjct 2191 GTCTTAAAACCAAAGTAGTCGTAATCAAAATCCCTATCATAGATGATT 2144 >seq89744 Length=19024 Score = 163 bits (180), Expect = 3e-35 Identities = 425/644 (66%), Gaps = 3/644 (0%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 |||||| ||||||| ||||| | ||||||||| || | | || || ||||| Sbjct 15483 CCAGGAGATTCATTGGGACAAAACAATGACCATGTAGAATTCTCCTGGACCCTTTTCATA 15424 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | | ||| | |||||| || | ||| | ||| | | || |||||| || ||| Sbjct 15423 AAGAGTTTTGGCACCCAAAGCGCAAAAAACAGATCACATGCCCTGTTTTCTTCCTTCCCA 15364 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 ||| | | | || ||||| || | | ||| ||||||||||| ||||| || || Sbjct 15363 TGGTTCTTCCTCAACTCCAGAAACTCAAAAA-ATCTGCATGCCATGGATCTAAGTACATG 15305 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| | || || |||||||| | ||||| ||||||| || | Sbjct 15304 GCAAAGGCACCCTTCCTCTTCCCTCCACCTTGATCAACATATCGAGCAGTATCATTGAAT 15245 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || || |||||||| ||||||||||| ||| | ||||| ||||| ||||| | | | Sbjct 15244 ACCCTCAACATTGGCACAATACCATTGGATGTGCCATTTGTTCCTTGGGTATAAATACTA 15185 Query 48456 CTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515 | || | || ||| | ||||| ||| | || || | ||| ||||| | || Sbjct 15184 GTTGCACGAATGTTATGCACTGAAACACCAAGTCCTCCAACTGATTTTCTTATTACAACA 15125 Query 48516 CACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAA 48575 || || || ||||||| || || || || |||||| | | || | || || Sbjct 15124 CATTCCTTTAGATTATCATATATCCCCTCAATGTTATCATATTTTATGCAAACAAGGAAT 15065 Query 48576 CAACTAGACATTTGCGGATGACAAGTTCCT-GAATTAAATAATGTTGGAGATGCATGAAT 48634 |||||| || ||| || || |||| | ||| |||| | ||||||| | ||| | Sbjct 15064 CAACTACTCAATTGTGGCCT-CAGTGTCCTAGTATTGAATAGTTTTGGAGAAGTATGGGT 15006 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATG 48694 ||||| | ||| | || | || |||| ||| | ||||| || || | ||| Sbjct 15005 GAACCAGCGTTGTGACATTAAATGGTAAGTTTTGATAGCTGAATCAATGTCATTCTTATG 14946 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754 || |||| | || | ||||||||||| |||||| || |||| || ||| | Sbjct 14945 AATCCCTACAACAACTCTCATTAACATATGTTGAGGCCTCTCAATAACAACTACATTGTT 14886 Query 48755 TTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGT 48798 ||| |||||||| ||| | |||||||| ||||||||||| |||| Sbjct 14885 TTTTAAAAGATACGATCTCTCCAATGTCTTAAAACCAAAGTAGT 14842 >seq59164 Length=25038 Score = 156 bits (172), Expect = 4e-33 Identities = 421/643 (65%), Gaps = 1/643 (0%) Strand=Plus/Plus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 |||||| ||||||| ||||| | ||||||||| || | | || || ||||| Sbjct 3527 CCAGGAGATTCATTGGGACAAAACAATGACCATGTAGAATTCTCCTAGACCCTTTTCATA 3586 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||||| | |||||| || | ||||| ||| | | || |||||| || ||| Sbjct 3587 AAGAGTTCTGGCACCCAAAGCGCAAAAAATAGATCACATGCCCTGTTTTCTTCCTTCCCA 3646 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 ||| | | | || ||||| || | | || ||||||||||| ||||| || || Sbjct 3647 TGGTTCTTCCTCAACTCCAGAAACTCAAAAA-ATATGCATGCCATGGATCTAAGTACATG 3705 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 | | |||| | || || |||||||| | ||||| ||||||| || | Sbjct 3706 GAAAAGGCACCCTTCCTCTTGCCTCCACCTTGATCAACATATCAAGCAGTATCATTGAAT 3765 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || || |||||||| || |||||||| ||| | ||||| ||||| ||||| | | | Sbjct 3766 ACCCTCAACATTGGCACGATACCATTGGATGTGCCATTTGTTCCTCGGGTATAAATACTA 3825 Query 48456 CTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515 | || | || ||| | ||||| ||| | || || || ||| ||||| | || Sbjct 3826 GTTGCACAAATGTTATGCACTGAAACACCAAATCCTCCAGCTGATTTTCTTATTACAACA 3885 Query 48516 CACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAA 48575 || || || ||||||| || || || || |||||||| |||| | || || Sbjct 3886 CATTCCTTTAGATTATCATATATCCCCTCAATGTTATCATCTTTCATGCAAAGAAGGAAT 3945 Query 48576 CAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATA 48635 |||||| || || || || || | ||| || | | | ||||| | ||| | Sbjct 3946 CAACTACTCAAATGTGGCCTCAGTGTCCCAGTATTGAAAATTTTAGGAGAAGTATGGGTG 4005 Query 48636 AACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGT 48695 ||||| | ||| | || | || |||| ||| ||||| || || | ||| Sbjct 4006 AACCAGCGTTGTGACATTAAATGGTAAGTTTTGATAGTTGAATCAATGTCATTCTTATGA 4065 Query 48696 ATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATT 48755 || |||| | || | ||||||||||| |||||| || |||| || ||| || Sbjct 4066 ATCCCTACAACAACCCTCATTAACATATGTTGAGGCCTCTCAATAACAACTCCATTGTTT 4125 Query 48756 TTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGT 48798 || |||||||| ||| | |||||||| ||||||||||| |||| Sbjct 4126 TTTAAAAGATACGATCTCTCCAATGTCTTAAAACCAAAGTAGT 4168 >seq177539 Length=11366 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||||| ||| | ||||||| ||| | || | |||||||| | ||||||| Sbjct 6552 CCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACGCGCAACATTGGCATAATACCA 6611 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| ||||| || ||||| | | | |||||| ||||||| Sbjct 6612 TTTGATGTGCCATTTGTTCCACGTATGTAACTATTTGTTGAACGAATATTATGAATTGAA 6671 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || || || ||||| ||| || | ||||| ||| |||||||||||||| Sbjct 6672 ACTCCAATGCCTCCTGCTGATTTGCTAATCACGGCACATTCTTTGAGGGTATCATAAATA 6731 Query 48540 CCTTCTATACTATCATCTATCATA 48563 ||||| || |||||||| ||||| Sbjct 6732 CCTTCAATGCTATCATCCTTCATA 6755 >seq2663879 Length=611 Score = 102 bits (112), Expect = 8e-17 Identities = 254/386 (66%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 ||||||||| ||| | ||||| ||||| ||||| | ||| | || | || ||| Sbjct 611 AATACCATTGGATGTGCCATTTGTTCCTCGGGTATAAATACCAGTTGCACGAATGTTATG 552 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 | ||||| ||| | || | || | ||| ||||| | ||| || || |||| Sbjct 551 CACTGAAACACCAAGTCCTCTAGCTAATTTTCTTATTACAAAACATTCCTTTAGATTATC 492 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 ||| || | || || |||||||| |||| | || || |||||| || || || Sbjct 491 ATATATCCTCTCAATGTTATCATCTTTCATGAAAACAAGGAATCAACTACTCAACTGTGG 432 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAA 48652 || || | ||| || | | | ||||| | ||| | ||||| | | ||| | Sbjct 431 CCTCGGTGTCCCAGTATTGAAAAGTTTAGGAGAAGTATGGGTGAACCAATGTTGTGACAT 372 Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712 || | || |||| ||| | ||||| || || | ||| || |||| | || | Sbjct 371 TAAATGGTAAGTTTTGATAGCTGAATCAATGTCATTCTTATGAATCCCTACAACAACCCT 312 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||||||||||| ||||||||| |||| || ||| |||| |||||||||||| | Sbjct 311 CATTAACATATGTTGAGGTCTCTCAATAACAACTCCATTGTTTTTTAAAAGATATGATCT 252 Query 48773 TTCCAATGTTTTAAAACCAAAATAGT 48798 |||||||| |||||| |||| |||| Sbjct 251 CTCCAATGTCTTAAAAACAAAGTAGT 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490062647599800