Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_017825.1 Length=36711 Score E Sequences producing significant alignments: (Bits) Value seq416950 313 5e-81 >seq416950 Length=5269 Score = 313 bits (346), Expect = 5e-81 Identities = 955/1461 (65%), Gaps = 44/1461 (3%) Strand=Plus/Plus Query 5997 GGCATGACCTCGGCACTCAGGTTGTCAGTTTCTAGAAACGAGGAGGATTTGATATTGACG 6056 ||||| | || ||||| | |||||||||||||| || || || |||||||| | | Sbjct 1250 GGCATAATTTCAGCACTAAAGTTGTCAGTTTCTATGAATGATGAAGATTTGATGGAAAAG 1309 Query 6057 GTGCCAGCGGAGATGCCTTTCAAGAGCCCCTCG--TCCATCTGGTCAGAAAAGACGAttt 6114 | || || |||| ||| || | || | || | ||||| ||||| || |||| Sbjct 1310 TTACCTCTGGCGATGGTTTTT--GACGCGCTGGCTTCTAGTTGGTCTGAAAACACAATTT 1367 Query 6115 ttttGTTGTCGAGCTTGGTGGCGAAGGAGCCGTAGAGGGCGTTGGAAAGGAGCTTGGCGA 6174 |||||||||| | || ||||| ||| ||| || | |||||||||||| ||||| || | Sbjct 1368 TTTTGTTGTCCAATTTAGTGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTA 1427 Query 6175 TGGAGCGCATGGTCTGGtttttttCCTTGTCGGCGCGCTCCTTGGCCGCGATGTTGAGCT 6234 || |||||||| ||||| ||||| ||||| || || ||||| ||||||| |||| Sbjct 1428 TGCTTCGCATGGTTTGGTTCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCT 1487 Query 6235 GCACGTACTCGCGCGCCACGCACTTCCATTCGGGGAAGACGGTGGTCATCTCGTCGGGCA 6294 ||||||| || |||||||||||||| || ||||||| ||| || | ||||| || | Sbjct 1488 GCACGTATTCTTTGGCCACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAA 1547 Query 6295 CGATTCTGACCTGCCAACCTCGATTATGCAGGGTGATGAGGTCCACACTGGTGGCCACCT 6354 || | || ||| |||| || |||| || || | ||| | | || || || | Sbjct 1548 GAATGCGCACTGCCCATCCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTT 1607 Query 6355 CGCCGCGCAGGGGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAGGGGG 6414 | || |||| |||||||| |||||||| || | ||||| || | ||||| || || | Sbjct 1608 CTCCTCGCAAAGGCTCGTTAGTCCAGCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAG 1667 Query 6415 GCAGAGGGTCCAGCATGACCTCGTCgggggggTCGGCATCGATGGTGAAGATGCCGGGCA 6474 |||| || || | | |||||| || || || || ||||||||||| ||||| || | Sbjct 1668 GCAGTTCATCAAGAAACAACTCGTCTGGAGGATCCGCGTCGATGGTGAAAATGCCTGGAA 1727 Query 6475 GGAGATCGGGGTCGAAGTAGCTGATGGAAGTGGCCAGATCGTCCAGGGAAGCTT-----G 6529 | ||| ||| || ||| || | | | || |||||| Sbjct 1728 GAAGACACTCGTCAAAATAGTCAATTTTTTGCTCTAAGTTTTC-----AAGCTTTCTGAT 1782 Query 6530 CCATTCGCGCACGGCCAGCGCGCGCTCGTAGGGACTGAGGGGCGTGCCC-CAGGGCATGG 6588 |||||| | | || | || | || || ||| | | ||| ||||| | ||| | | Sbjct 1783 CCATTCTGTCGCAGCTAAGGCTCTTTCATACGGATTTAAAGGC-TGCCCGCTGGGAAAAG 1841 Query 6589 GGTGGGTGAGCGCGGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCCTCGA 6648 | || || || || ||| ||||||||||||||||| || || || | |||| || | Sbjct 1842 GATGCGTTAGAGCACTGGCATACATGCCGCAGATGTCATACACATAAATTGGCTGTTCCA 1901 Query 6649 GGATGCCGATGTAGGTGGGGTAGCAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTCAT 6708 |||||| || || ||||| |||||||| || || |||||||| ||| |||||||||| Sbjct 1902 TGATGCCAATATAAGTGGGATAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTCAT 1961 Query 6709 ACAGCTCGTGCGAGGGCGCGAGGAGCCCCGGGCCCAGGTTGGTGCGACTGGGCTTTTCGG 6768 ||| || || || || || | | | | | | ||| | | | ||| | | Sbjct 1962 ACATTTCATGAGATGGTGCTAATAAAACGTTGTCTAAGTTTGCTTTATTTGGCCTAACTT 2021 Query 6769 CGCGGTAGACGATCTGGCGAAAGATGGCATGCGAGTTGGAGGAGATGGTGGGCCTTTGGA 6828 | | ||| | || || ||| || ||||| ||||| ||| || ||||| ||||| | Sbjct 2022 CTCTGTATAATATTTGCTTAAAAATTGCATGAGAGTTAGAGCTAATAGTGGGTCTTTGAA 2081 Query 6829 AGATGTTGAAGTGGGCGTGGGGGAGGCCGAC-CGAGTCGCGGATGAAGTGGGCGTAGGAG 6887 | ||||| || || | || | | || ||| || || |||| ||| || Sbjct 2082 AAATGTTAAATGAAGCATCAGGTAAGTTCACTTGAGAAGC-AATAAAGTTTTTGTAAGAT 2140 Query 6888 TCTTGCAGTTTGGCGACGAGCTCGGCGGTGACGAGGACGTCCAGAGCGCAGTAGTCGAGG 6947 ||||| |||||| || || | | || || | ||||| | | || |||| || Sbjct 2141 TCTTGGAGTTTGTTTACTAGGGCCGATGTCACTAACACGTCTTGCACACAATAGTGCAGC 2200 Query 6948 GTCTCCTGGATGATGTCATACTTGAGCTGGCCC----TTTTGTTTCCACAGCTCGCGGTT 7003 || | |||||| ||||| || ||| | | |||| | ||||||| | ||| Sbjct 2201 GTTTGCTGGATTATGTCGTA----AGCCCCCACGTTTTTTTCTCTCCACAGAGCCTTGTT 2256 Query 7004 GAGAAGGAACTCTTCGCGGTCCTTCCAGTACTCTTCGAGG---GGGAACCCGTCCTGATC 7060 ||| | ||||||||| | |||||||| |||| ||| || || || |||| ||| Sbjct 2257 GAGTTGATACTCTTCGCTGGATTTCCAGTA-TCTT--AGGCTTGGAAAGCCATCCTCATC 2313 Query 7061 TGCACGGTAAGAGCCTAGCATGTAGAACTGGTTGACGGCCTTGTAGGCGCAGCAGCCCTT 7120 | ||||||| |||| | ||||| | || || || | ||| | |||| || || Sbjct 2314 TTGTTGGTAAGACCCTATTCTATAGAATTCATTTACTGCTTCGTACGGACAGCTTCCTTT 2373 Query 7121 CTCCACGGGGAGGGCGTAGGCCTGGGCGGCCTTGCGCAGGGAGGTGTGCGTGAGGGCGAA 7180 || || || || |||| ||| || || || | | | ||||| || || || || Sbjct 2374 TTCTACAGGCAGCTCGTAAGCCCCAGCAGCATTTCTTAAGCTAGTGTGGGTCAGCGCAAA 2433 Query 7181 GGTGTCCCTGACCATGACCTTGAGGAACTGGTGCTTGAAATCGATATCGTCGC----AGC 7236 ||||| || ||||| | || | ||||||| |||| || || || ||| Sbjct 2434 AGTGTCTCTTACCATAAATTTAACAAACTGGTACTTGTGGTC-----CGCGGCTGTGAGC 2488 Query 7237 -CCCCCTGCTCCCAGAGCTG-GAAGTCCGTGCGCTTCTTGTAGGCGGGGTTGGGCAAAGC 7294 || |||||| | | | ||| || | || || | ||| || || || || Sbjct 2489 TTTCCACACTCCCA-ATCGGCGAAATCTTTTCGTTTTTCGTACTTTGGATTAGGTAAGCA 2547 Query 7295 GAAAGTAACATCGTTGAAAAGGATCTTGCCCGCGCGGGGCATAAAGTTGCGAGTGATGCG 7354 |||| || || ||||| || || || || | |||||||| || | | | || Sbjct 2548 AAAAGAAATGTCATTGAACAGTATTTTACCGTTTCTTGGCATAAAATTTCTATTTATTTT 2607 Query 7355 GAAAGGCTGGGGCACCTCGGCCCGGTTGTTGATGACCTGGGCGGCGAGCACGATCTCGTC 7414 ||||| | | || || | | ||||| ||||| || ||||| | ||||||||| || Sbjct 2608 GAAAGCAGGCAGAACATCCGTTCTGTTGTGTATGACTTGCGCGGCCAACACGATCTCATC 2667 Query 7415 GAAACCGTTGATGTTGTGGCC 7435 |||||| |||||||||||| Sbjct 2668 AAAACCGCAGATGTTGTGGCC 2688 Score = 107 bits (118), Expect = 4e-19 Identities = 226/337 (67%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 5544 GGGTCAAAAACCAGTTTCCCGCCGTTCTTTTTGATGCGTTTCTTACCTTTGGTCTCCATG 5603 || |||||||| || ||||| || || || || ||||| | |||||| | ||||||| Sbjct 821 GGATCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCCATG 880 Query 5604 AGCTCGTGTCCCCGCTGGGTGACAAAGAGGCTGTCCGTGTCCCCGTAGACCGACTTTATG 5663 ||| ||| ||| | ||| ||||| | |||||| |||||||||||||| || ||||| Sbjct 881 AGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTTATA 940 Query 5664 GGCCGGTCCTCGAGCGGTGTGCCGCGGTCCTCCTCGTAGAGGAACCCCGCCCACTCCGAG 5723 | | | || || | || | ||| || |||| | || | |||||||| || Sbjct 941 GTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCAGAC 1000 Query 5724 ACGAAAGCCCGGGTCCAGGCCAGCACGAAGGAGGCCACGTGGGACGGGTAGCGGTCGTTG 5783 || || | | |||||||||| || || || || | |||||| | ||| | || ||| Sbjct 1001 ACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTGTTT 1060 Query 5784 TCCACCAGCGGGTCCACTTTTTCCAGGGTATGCAAACACATGTCCCCCTCGTCCACATCC 5843 || | | || ||||| | || || || || ||||| | || || || Sbjct 1061 TCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTTTCT 1120 Query 5844 AGGAAGGTGATTGGCTTGTAAGTGTAGGCCACGTGAC 5880 | || ||||||||||| || | || | |||||||| Sbjct 1121 AAAAACGTGATTGGCTTATACTTATATGTCACGTGAC 1157 Score = 98.7 bits (108), Expect = 2e-16 Identities = 370/578 (64%), Gaps = 18/578 (3%) Strand=Plus/Plus Query 8603 CGGTTGACGTCCTGGATCTGACGCCTCTGGGTGAAGGCCACGGGACCCGTGAGTTTGAAC 8662 ||||||| || ||| |||| ||| || || |||| || || || | | ||||| Sbjct 3691 CGGTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGTCACTCTGAAC 3750 Query 8663 CTGAAAGAGAGTTCGACAGAATCAATCTCGGTATCGTTGACGGCGGCCTGCCGCAGGATC 8722 |||||||| | ||| | ||| ||||| || | || || || || | ||| | ||| Sbjct 3751 CTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAATC 3810 Query 8723 TCTTGCACGTCGCCCGAGTTGTCCTGGTAGGCGATCTCGGTCATGAACTGCTCGATCTCC 8782 || |||||| || ||| || || || || || || | ||| |||||||| ||||| Sbjct 3811 TCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCAATCTCT 3870 Query 8783 TCCTCCTGAAGGTCTCCGCGACCGGCGCGCTCCACGGTGGCCGCGAGGTCGTTGGAGATG 8842 |||| || | ||||| | || || | ||| || ||||| || | ||| || ||| Sbjct 3871 TCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATGCTAATG 3930 Query 8843 CGGCCCATGA-GCTGCGAGAAGGC-GTTCATGCCCGCCTCGTTCCAGACGCGGCTGTAGA 8900 || ||||| | | | | ||| | |||| || || ||||| || | |||||| | Sbjct 3931 CGAGACATGATGTTACTAAAAGCCTGTTC--CCCATTTTCATTCCACACTCTGCTGTACA 3988 Query 8901 CCACGACGCCCTCGGGATCGCGGGCGCGCATGACCACCTGGGCGAGGTTGAGCTCCACGT 8960 | | || || | | ||| | ||| || ||||| || || || ||| ||| | Sbjct 3989 CAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCATCACAT 4048 Query 8961 GGCGC-------GTGAAGACCGCGTAGTTGCAGAGGCGCTGGTAGAGGTAGTTGAGCGTG 9013 | | | ||||| | || || | || | | |||||| || ||| Sbjct 4049 ATCTCCCAAAAGGGGAAGATACCCTAATT-------TGGTGATTTAAGTAGTTTAGTGTG 4101 Query 9014 GTGGCGATGTGCTCGGTGACGAAGAAATACATGATCCAGCGGCGGAGCGGCATCTCGCTG 9073 || || ||||| || | || || || |||| | |||||| |||| | | || | Sbjct 4102 GTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTA 4161 Query 9074 ACGTCGCCCAGCGCCTCCAAGCGTTCCATGGCCTCGTAAAAGTCCACGGCGAAGTTGAAA 9133 | ||| || ||||||||||| || | || |||| ||||| | || || ||||| ||| Sbjct 4162 ATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAA 4221 Query 9134 AACTGGGAGTTGCGCGCCGAGACGGTCAACTCCTCCTC 9171 ||||| ||| | || || || || | ||| || || Sbjct 4222 AACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTC 4259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103064317244070