Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_020487.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq416950 242 8e-60 seq1393656 136 8e-28 >seq416950 Length=5269 Score = 242 bits (268), Expect = 8e-60 Identities = 497/730 (68%), Gaps = 14/730 (2%) Strand=Plus/Plus Query 6652 TTCAGAACTGAGGTTGTCAGTTTCAATGAAGGAGGAGGATTTGATGGAATAGTGCCCCGA 6711 ||||| ||| | |||||||||||| ||||| || || |||||||||||| ||| || Sbjct 1258 TTCAGCACTAAAGTTGTCAGTTTCTATGAATGATGAAGATTTGATGGAAAAGTTACCTCT 1317 Query 6712 GGCCACGCCCTT-GACGAG--GGCCCCCTCCATCTGGTCAGAAAACACCGTCTTTTTATT 6768 ||| | | || |||| | ||| || | ||||| |||||||| | ||||| || Sbjct 1318 GGCGATGGTTTTTGACGCGCTGGCT---TCTAGTTGGTCTGAAAACACAATTTTTTTGTT 1374 Query 6769 GTCCAGCTTGGTGGCGAAGGAGCCATAGAGGGCGTTGGAGAGCAATTTGGCGATGGAGCG 6828 ||||| || ||||| ||| |||||| | ||||||||| || | || || ||| || Sbjct 1375 GTCCAATTTAGTGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCG 1434 Query 6829 GAGCGTTTGGTTTTTGTCGCGATCGGCGCGTTCCTTGGCGGCGATGTTGAGTTGCACGTA 6888 | |||||||| || || || || ||| ||||| ||||||| || |||||||| Sbjct 1435 CATGGTTTGGTTCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTA 1494 Query 6889 CTCGCGGGCGACACAGCGCCACTCGGGGAAGACGGTGGCCCGCTCGTCGGGTTGCAAGCG 6948 || ||| || || |||||| ||||||| ||| | | ||||| || | | ||| Sbjct 1495 TTCTTTGGCCACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCG 1554 Query 6949 CACGCGCCAGCCGCGGTTGTGCAGGGTCATGACGTCGATGCTGGTGGCCACCTCGCCGCG 7008 ||| ||| || | |||||||| || || | ||| || || || || || || || Sbjct 1555 CACTGCCCATCCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCG 1614 Query 7009 CAGGCTCTCGTTGGTCCAGCAGAGACGGCCGCCCTTGCGCGAGCAGAAGGGGGGCAGGAC 7068 || |||||| |||||||| || | ||||| || | ||||| || || ||||| | Sbjct 1615 CAAAGGCTCGTTAGTCCAGCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTC 1674 Query 7069 GTCGAGCATGTCCTCGGGCGGGGGGTCGGCGTCGATGGTGAAGATGCCGGGCAGCAGGTC 7128 || || | |||| || || || |||||||||||||| ||||| || || || Sbjct 1675 ATCAAGAAACAACTCGTCTGGAGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGACA 1734 Query 7129 GGGGTCAAAGTAGTCCAGGGGCGTGTCGCGGCGGTCGAGCCGTTGCTG--CCAGGC-GT- 7184 |||||| ||||| | || | || ||| || ||| ||| | || Sbjct 1735 CTCGTCAAAATAGTCAATTTTTTGCTCTAAGTTTTCAAGC--TTTCTGATCCATTCTGTC 1792 Query 7185 GCAGGGCCAGGGCCCGCTCGTAGGGGTTGAGGGGCGCCCCCGCGGGGAAGGGATGGGTGA 7244 ||| || | ||| | || || || || | ||| ||| ||| || ||||| || | Sbjct 1793 GCA--GCTAAGGCTCTTTCATACGGATTTAAAGGCTGCCCGCTGGGAAAAGGATGCGTTA 1850 Query 7245 GGGCGGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCCTCGAGGACGCCGA 7304 | || ||| ||||||||||||||||| || || || | |||| || | || ||| | Sbjct 1851 GAGCACTGGCATACATGCCGCAGATGTCATACACATAAATTGGCTGTTCCATGATGCCAA 1910 Query 7305 TGAAGGTGGGGTAGCAGCGCCCCCCGCGGATGCTGGCGCGGACGTAGTCATACAACTCGT 7364 | | ||||| |||||||| || || |||||||| ||||||||||||||||| || | Sbjct 1911 TATAAGTGGGATAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCAT 1970 Query 7365 GGGAGGGGGC 7374 | || || || Sbjct 1971 GAGATGGTGC 1980 Score = 136 bits (150), Expect = 8e-28 Identities = 382/581 (66%), Gaps = 8/581 (1%) Strand=Plus/Plus Query 9184 AAGACCACCGGTCCCGTGGTTTTGAACCTGAAAGACAATTCGACAGAATCAATCTCGGCA 9243 || ||||| || || || | ||||||||||||| | ||| | ||| ||||| || || Sbjct 3724 AATACCACTGGGCCGGTCACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCG 3783 Query 9244 TCGTTGACGGCGGCCTGCCTGAGGATTTCGCTGACGTCGCCGGAGTTGTCTTGGTAGGCG 9303 || || || || | ||| | | || || || ||||| ||| ||| || || || || Sbjct 3784 TCATTAACTGCCACTTGCTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCT 3843 Query 9304 ATCTCGGCCATGAACTGCTCGACTTCCTCCTCCTCGAGTTCCCCGTGTCCGGCGCGTTCG 9363 || || ||||| |||||||| | || |||| ||| | || || || || | || Sbjct 3844 ATTTCTGCCATAAACTGCTCAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCA 3903 Query 9364 ACGGTGGCGGCGAGGTCGTTGCTGATGCGCCCGATGA-GTTGTTGGAAGGC-GTTGAGGC 9421 || ||||| || | ||| |||| ||||| |||| ||| | ||| | ||| | Sbjct 3904 ACTGTGGCAGCCAAGTCAATGCTAATGCGAGACATGATGTTACTAAAAGCCTGTTCC--C 3961 Query 9422 CGTTCTCGTTCCAGACGCGCGAGTAGACCACGTCTCCGTGGACGTCGCGGGCGCGCATGA 9481 | || || ||||| || | ||| || | | ||| | ||| | ||| | ||| | Sbjct 3962 CATTTTCATTCCACACTCTGCTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTA 4021 Query 9482 CCACCTGGGCGAGGTTGAGCTCCACGTGGCGGGCGCAGACGGGGTAGTTGCGC--AGCCG 9539 | ||||| || || || ||| ||| | | | || | |||| || | | | | | Sbjct 4022 CTACCTGCGCCAGATTAAGCATCACATATCT--CCCAAAAGGGGAAGATACCCTAATTTG 4079 Query 9540 CTGGTAGAGGTAATTGAGGGTGGTGGCGGCGTGCTCGGTGACGAAGAAGTACATGACCCA 9599 || | | ||| || || ||||| || ||| || | || || ||| |||| ||||| Sbjct 4080 GTGATTTAAGTAGTTTAGTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCA 4139 Query 9600 GCGCCGGAGGGTGAGTTCGTTGATGTCGCCGAGGGCCTCGAGCCGTTGCATGGCCTCGTA 9659 ||| |||| || ||| || ||||| || || ||||| | || || || |||| || Sbjct 4140 GCGTTGGAGAGTTGTTTCATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATA 4199 Query 9660 GAAGTCCACGGCGAAGTTGAAGAACTGGCTGTTGCGCGCCGAGACCGTGAGCTCTTCTTC 9719 || | || || ||||| || ||||| ||| | || || || |||||||||||||| Sbjct 4200 AAAATTTACAGCAAAGTTAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTC 4259 Query 9720 CAAGAGCCGGATGAGTTCGGCCACCGTGGCCCGGACCTCGC 9760 || | || ||| ||| ||||| | || || || |||| Sbjct 4260 TAATAAGCGAATGGTTTCTGCCACAGCGGTCCTAACTTCGC 4300 Score = 132 bits (146), Expect = 1e-26 Identities = 298/446 (67%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 6047 GCGTAGAGTTTGGGGGCGAGGAAGACGGACTCTGGGCTGTAGGCGTCGGCGCCGCACTTG 6106 || || ||||| || ||||| ||||| || || | || | || || | || || Sbjct 713 GCATACAGTTTAGGAGCGAGAAAGACAGATTCAGAACTAAAAGCATCAGACTTACATTTT 772 Query 6107 CTACACTGGGTCTCGCATTCGACGAGCCAGGTGA--GCTGGGGATGCTGGGGGTCAAAGA 6164 |||||| ||||| ||||| || | ||| || | | |||| | ||| ||||| | Sbjct 773 TCACACTGAGTCTCACATTCAACCAACCATGTAATAGATGGGTTTTTTGGA--TCAAAAA 830 Query 6165 CTAGGCCTCCGCCATTTTTCTTGATGCGATGCTTACCTCGGGTTTCCATGAGTCGATGGC 6224 |||| || ||||||||||| ||||| || ||||||| |||||||| || || | Sbjct 831 CTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCCATGAGCCGGTGCC 890 Query 6225 CGCGTTCGGTGACGAAGAGGGAGTCGGTGTCTCCGTAGACAGATTTCAGGGGTCGCAGGT 6284 | |||||| || || | | ||| ||||| |||||||||||||| | | | | | Sbjct 891 CCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTTATAGTTTTTTGAT 950 Query 6285 GGAGGGGGGTGCCGCGGTCCTCGTCGTAGAGGAAGCCGGCCCACTCGGAGACGAAGGCTC 6344 | || || | || | ||| ||| |||| | || | |||||||| || || || ||| Sbjct 951 GTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCAGACACAAATACTC 1010 Query 6345 TGGTCCAGGCGAGGACGAAGCTGGCAATGTGCGAGGGGTAGCGTTCGTTCTCGATCAAGG 6404 | |||||||| | || || |||||||| || | ||| | | ||| || || || | Sbjct 1011 TAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTGTTTTCTATTAAAG 1070 Query 6405 GGTCGTTCTTTTCCAGGGTGTGGAGACAGAGCGCGTCCTCGTCGCAGTCCAGGAAGGTGA 6464 | ||| ||||| | ||||| | || | | || || || || | || |||| Sbjct 1071 GAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTTTCTAAAAACGTGA 1130 Query 6465 TTGGCTTGTAAGTGTAGGTCACGTGA 6490 ||||||| || | || ||||||||| Sbjct 1131 TTGGCTTATACTTATATGTCACGTGA 1156 >seq1393656 Length=1543 Score = 136 bits (150), Expect = 8e-28 Identities = 382/581 (66%), Gaps = 8/581 (1%) Strand=Plus/Plus Query 9184 AAGACCACCGGTCCCGTGGTTTTGAACCTGAAAGACAATTCGACAGAATCAATCTCGGCA 9243 || ||||| || || || | ||||||||||||| | ||| | ||| ||||| || || Sbjct 32 AATACCACTGGGCCGGTCACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCG 91 Query 9244 TCGTTGACGGCGGCCTGCCTGAGGATTTCGCTGACGTCGCCGGAGTTGTCTTGGTAGGCG 9303 || || || || | ||| | | || || || ||||| ||| ||| || || || || Sbjct 92 TCATTAACTGCCACTTGCTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCT 151 Query 9304 ATCTCGGCCATGAACTGCTCGACTTCCTCCTCCTCGAGTTCCCCGTGTCCGGCGCGTTCG 9363 || || ||||| |||||||| | || |||| ||| | || || || || | || Sbjct 152 ATTTCTGCCATAAACTGCTCAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCA 211 Query 9364 ACGGTGGCGGCGAGGTCGTTGCTGATGCGCCCGATGA-GTTGTTGGAAGGC-GTTGAGGC 9421 || ||||| || | ||| |||| ||||| |||| ||| | ||| | ||| | Sbjct 212 ACTGTGGCAGCCAAGTCAATGCTAATGCGAGACATGATGTTACTAAAAGCCTGTTCC--C 269 Query 9422 CGTTCTCGTTCCAGACGCGCGAGTAGACCACGTCTCCGTGGACGTCGCGGGCGCGCATGA 9481 | || || ||||| || | ||| || | | ||| | ||| | ||| | ||| | Sbjct 270 CATTTTCATTCCACACTCTGCTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTA 329 Query 9482 CCACCTGGGCGAGGTTGAGCTCCACGTGGCGGGCGCAGACGGGGTAGTTGCGC--AGCCG 9539 | ||||| || || || ||| ||| | | | || | |||| || | | | | | Sbjct 330 CTACCTGCGCCAGATTAAGCATCACATATCT--CCCAAAAGGGGAAGATACCCTAATTTG 387 Query 9540 CTGGTAGAGGTAATTGAGGGTGGTGGCGGCGTGCTCGGTGACGAAGAAGTACATGACCCA 9599 || | | ||| || || ||||| || ||| || | || || ||| |||| ||||| Sbjct 388 GTGATTTAAGTAGTTTAGTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCA 447 Query 9600 GCGCCGGAGGGTGAGTTCGTTGATGTCGCCGAGGGCCTCGAGCCGTTGCATGGCCTCGTA 9659 ||| |||| || ||| || ||||| || || ||||| | || || || |||| || Sbjct 448 GCGTTGGAGAGTTGTTTCATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATA 507 Query 9660 GAAGTCCACGGCGAAGTTGAAGAACTGGCTGTTGCGCGCCGAGACCGTGAGCTCTTCTTC 9719 || | || || ||||| || ||||| ||| | || || || |||||||||||||| Sbjct 508 AAAATTTACAGCAAAGTTAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTC 567 Query 9720 CAAGAGCCGGATGAGTTCGGCCACCGTGGCCCGGACCTCGC 9760 || | || ||| ||| ||||| | || || || |||| Sbjct 568 TAATAAGCGAATGGTTTCTGCCACAGCGGTCCTAACTTCGC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103421232912000