Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq89744 116 2e-21 seq59164 116 2e-21 seq8774173 105 3e-18 seq1080979 102 4e-17 seq76002 102 4e-17 seq6907064 91.5 7e-14 seq177539 84.2 1e-11 >seq89744 Length=19024 Score = 116 bits (128), Expect = 2e-21 Identities = 147/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | | ||| | ||| | ||| |||| | ||| | || || ||||||| || Sbjct 15427 CATAAAGAGTTTTGGCACCCAAAGCGCAAAAAACAGATCACATGCCCTGTTTTCTTCCTT 15368 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || || ||||| | | || | || ||||||| ||||| |||||||| ||||| || Sbjct 15367 CCCATGGTTCTTCCTCAACTCCAGAAACTCAAAAA-ATCTGCATGCCATGGATCTAAGTA 15309 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || ||||| ||| || || || |||||||||||||| || |||| ||||| ||||| Sbjct 15308 CATGGCAAAGGCACCCTTCCTCTTCCCTCCACCTTGATCAACATATCGAGCAGTATCATT 15249 Query 26113 GAAAACTTTCAACATTGGAAC 26133 ||| || |||||||||| || Sbjct 15248 GAATACCCTCAACATTGGCAC 15228 >seq59164 Length=25038 Score = 116 bits (128), Expect = 2e-21 Identities = 147/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||||| | ||| | ||| |||||| ||| | || || ||||||| || Sbjct 3583 CATAAAGAGTTCTGGCACCCAAAGCGCAAAAAATAGATCACATGCCCTGTTTTCTTCCTT 3642 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || || ||||| | | || | || ||||||| || || |||||||| ||||| || Sbjct 3643 CCCATGGTTCTTCCTCAACTCCAGAAACTCAAAAA-ATATGCATGCCATGGATCTAAGTA 3701 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || | ||| ||| || || || |||||||||||||| || |||| ||||| ||||| Sbjct 3702 CATGGAAAAGGCACCCTTCCTCTTGCCTCCACCTTGATCAACATATCAAGCAGTATCATT 3761 Query 26113 GAAAACTTTCAACATTGGAAC 26133 ||| || |||||||||| || Sbjct 3762 GAATACCCTCAACATTGGCAC 3782 >seq8774173 Length=221 Score = 105 bits (116), Expect = 3e-18 Identities = 141/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||||| | ||| | ||| |||||| ||| | || || ||| ||| || Sbjct 194 CATAAAGAGTTCTGGCACCCAAAACGCAAAAAATAGATCACATGCCCTGTTTTATTCCTT 135 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || || ||||| | | || | || ||||||| || || |||||||| ||||| || Sbjct 134 CCCATGGTTCTTCCTCAACTCCAGAAATTCAAAAA-ATATGCATGCCATGGATCTAAGTA 76 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || ||||| || || || ||||||||||||||||| || |||| | ||| ||||| Sbjct 75 CATGGCAAAGGCGCCCTTCCTCTTTCCTCCACCTTGATCAACATATCGAGTAGTATCATT 16 Query 26113 GAAAACTTTCAACAT 26127 ||| || ||||||| Sbjct 15 GAATACCCTCAACAT 1 >seq1080979 Length=2029 Score = 102 bits (112), Expect = 4e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 25983 TTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATG 26042 ||||||| || || || ||||| | | || | || ||||||| ||||| ||||||| Sbjct 2 TTTCTTCCTTCCCATGGTTCTTCCTCAACTCCAGAAACTCAAAAA-ATCTGCATGCCATG 60 Query 26043 GTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTG 26102 | ||||| || || ||||| ||| || || || |||||||||||||| || |||| | Sbjct 61 GATCTAAGTACATGGCAAAGGAACCCTTCCTCTTGCCTCCACCTTGATCAACATATCGAG 120 Query 26103 CAGTTTCATTGAAAACTTTCAACATT 26128 |||| |||||||| || |||||||| Sbjct 121 CAGTATCATTGAATACCATCAACATT 146 >seq76002 Length=21272 Score = 102 bits (112), Expect = 4e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||||| | ||| | |||| |||| | ||| | | || ||||||| || Sbjct 19398 CATAAAGAGGTCTGGCACCCAAAGTGCAAAAAACAGATCACGTGTCCTGTTTTCTTCCTT 19339 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || || ||||| | | || | || ||||||| ||||| ||||||| ||||| || Sbjct 19338 CCCATGGTTCTTCCTCAACTCCAGAAACTCAAAAACATCTGCATGCCATGTCTCTAAGTA 19279 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || | ||| ||| || || || |||||||||||||| || |||| | | ||||| Sbjct 19278 CATGGAAAAGGCACCCTTCCTCTTGCCTCCACCTTGATCAACATATCGAGAAAAATCATT 19219 Query 26113 GAAAACTTTCAACATTGGAAC 26133 ||| || |||||||||| || Sbjct 19218 GAATACCCTCAACATTGGCAC 19198 >seq6907064 Length=260 Score = 91.5 bits (100), Expect = 7e-14 Identities = 93/119 (78%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 26016 AGAAA-TCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTT 26074 ||||| ||||||| || || |||||||| ||||| || || | ||| ||| || || Sbjct 252 AGAAACTCAAAAA-ATATGCATGCCATGGATCTAAGTACATGGAAAAGGCACCCTTCCTC 194 Query 26075 TTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAAC 26133 || |||||||||||||| || |||| ||||| |||||||| || |||||||||| || Sbjct 193 TTGCCTCCACCTTGATCAACATATCAAGCAGTATCATTGAATACCCTCAACATTGGCAC 135 >seq177539 Length=11366 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 25049 TTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTT 25108 ||||| ||| |||| ||||| || ||||| || || | |||||| ||| ||||||||| Sbjct 4532 TTTGATGTGTATGGCTCAAAGCACTCATTGTTCCCAAGAATTTGACTAGTTGATGCTGTT 4591 Query 25109 GGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAAT 25168 ||||| || || | ||| |||||||||| ||||| ||| ||| | ||| |||| Sbjct 4592 GGCATAGGAGCAATAAGTAGAGAATTTCTCACACCATTTTTTGCAACCATTTGCCTTAAG 4651 Query 25169 TTATCCCAATC 25179 | ||||||| Sbjct 4652 GCAGCCCAATC 4662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221418373647125