Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq220612 118 1e-21 seq178673 105 7e-18 seq177539 98.7 1e-15 seq6585 91.5 2e-13 >seq220612 Length=9589 Score = 118 bits (130), Expect = 1e-21 Identities = 293/442 (66%), Gaps = 2/442 (0%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || || || ||| |||| ||||| | | || || ||| || || || ||| Sbjct 2818 GTTGAGTTCCTGAAGAAACCAGAGAGGTTTACTGCAATTGGAGCTCGTATTCCTAAAGGA 2877 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||| | |||| ||||| || || ||||| | || ||| ||||| || || Sbjct 2878 GTTCTTCTTGTGGGTCCACCAGGGACTGGGAAGACTTTGCTAGCCAAGGCCATTGCAGGG 2937 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||| | | | ||||| ||||||||||| ||| Sbjct 2938 GAAGCTGGTGTACCCTTCTTCTCTATCTCAGGGTCTGAGTTTGTTGAGATGTTTGTCGGT 2997 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 | || || || || || || || || ||| ||| |||||| || || ||| Sbjct 2998 ATCGGAGCATCTAGAGTGCGTGACCTGTTCAAAAAGGCCAAAGAAAATGCCCCTTGCATT 3057 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATG-CCAGC 175535 || ||| | ||||| |||||||| || || | ||| | | |||| || | || Sbjct 3058 GTTTTCGTCGATGAAATTGATGCAGTTGGTAGGCAGAGAGGAACTGG-AATAGGTGGAGG 3116 Query 175536 AAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAA 175595 |||||| ||| |||||||||| | ||||| || || || || |||||||| ||||| Sbjct 3117 AAATGATGAGCGAGAACAAACCCTGAATCAGCTTCTTACAGAAATGGATGGTTTTGAAGG 3176 Query 175596 TGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCT 175655 | ||||| || | || ||||| || || || | | ||||| ||||||| || | Sbjct 3177 GAACACTGGTATCATTGTGATTGCTGCAACCAACAGGGCTGATATACTTGATGCTGCTTT 3236 Query 175656 CCTTCGCCCGGGTCGTTTTGAT 175677 | ||||| || ||||||||| Sbjct 3237 GTTGCGCCCAGGGCGTTTTGAT 3258 >seq178673 Length=11302 Score = 105 bits (116), Expect = 7e-18 Identities = 233/340 (69%), Gaps = 22/340 (6%) Strand=Plus/Minus Query 177592 GTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACA 177651 || || |||||||| ||||| | || ||||| || | ||| | |||||| || || ||| Sbjct 3648 GTGGCAACAACATAGTCATCGGGCTTATCTTGCTGCACCATCAACCACATTGCCTCCACA 3589 Query 177652 TAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCT 177711 |||||| ||| ||||| || |||| || ||||| || || | | || || | Sbjct 3588 TAGTCCCCAGCAAATCCCCAATCCCTGGAGGCCTTGAGATTGCCCAAATACAGCTTCT-T 3530 Query 177712 CTCTCACCTTTCACAATTTGTTTGACGCCATCAG------TAATCTTCTTTGTGACAAAG 177765 || || || | |||| || | ||| ||| | |||||| ||||||||||| Sbjct 3529 CTGAAGCC---CA-ATTTTGATTCTCCCCA-CAGCCCTGGTGATCTTCCTTGTGACAAAG 3475 Query 177766 TCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCA 177825 | |||||| || || || ||||||||||| ||||| || ||||||| |||| ||| Sbjct 3474 TTCTCACCTCTCCTTGGGGACTCGTGGTTGAACAGGATCCCATTGCAGGCAAACATTCCA 3415 Query 177826 TAGGATTCTCGGTAATTTTTGAC-GA--GCCAGTGAGCGGCCAATTTGGAGACGCCATA- 177881 || | |||| ||| ||||| || ||| || || || | |||||||| |||| Sbjct 3414 TATGCCTCTCTGTA---GTTGACAGAATACCAATGGGCTGCAAGCTTGGAGACAGCATAA 3358 Query 177882 -GACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGG 177920 ||| || ||||| |||||| || | |||| | || || Sbjct 3357 GGAC--TTCTTGGGTGGAAGGGGGTGTTCTCATTCTGGGG 3320 >seq177539 Length=11366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 ||||| | || |||| ||||| || || |||||||||||||||||||| ||||||| Sbjct 5766 AGGATTCATGCAACAGAAAGAGCAATCAGCAGAATTTGGGAACAATCAAGTCTTCAAATC 5707 Query 75993 TTTGCACGGAAATTTTAGAGTACAC-AGATAAGGATGAGACGGCTGTTTGCAATTTGGCA 76051 ||||||| |||||| | |||||||| || | | || | || ||||| ||||||||| Sbjct 5706 TTTGCACAGAAATTATTGAGTACACTAGCCCAACA-GAAAGTGCAGTTTGTAATTTGGCA 5648 Query 76052 TCAATCGCCCTTCCAA 76067 ||| | || || |||| Sbjct 5647 TCACTTGCTCTGCCAA 5632 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 76119 TCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG 76178 ||||| || ||||| |||| || ||| | ||||||| |||| ||||| || | Sbjct 5284 TCACATCAATAGTTACTCAAAACCTGAACAAAATCATTGATGTGAATTACTATCCTGTAG 5225 Query 76179 AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCG 76238 | ||||| |||| |||||||| |||||||||||||| | |||||||| || || | Sbjct 5224 AAACTGCAAAGCAGTCAAATATGCGTCACAGACCTATTGGCATTGGTGTTCAGGGCCTTG 5165 Query 76239 CGGATGTATTTATTTTGTGCCGCTACG-CATTTGATTCAGATGA 76281 | ||| |||||||||| | || | ||||||| ||||| || Sbjct 5164 CTGATACATTTATTTTG-CTTGGTATGCCATTTGACTCAGAAGA 5122 >seq6585 Length=56338 Score = 91.5 bits (100), Expect = 2e-13 Identities = 186/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||| | ||||||||||| || || || ||| |||||||| ||||| || | | || Sbjct 3863 TTTATAGAGATGTTTGTAGGAGTAGGAGCCTCTAGGGTTCGTGATCTTTTCAAGAGGGCA 3804 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 |||||| ||| |||||| | ||||| ||||| | ||||| ||||| | ||| | Sbjct 3803 AAGGAAAATGCACCTTGTATTATTTTCATAGATGAACTCGATGCAGTGGGAAGGCAGAGG 3744 Query 175516 AGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | | || |||| || ||||| || ||||||| ||| | || ||| | || Sbjct 3743 GGAACAGGAATTGGT---GGAGGCAATGATGAACGAGAACAGACATTGAACCAATTGCTT 3687 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 || ||||||||||| ||||| | ||||| | | || || || || || ||||| Sbjct 3686 ACTGAGATGGATGGATTTGAAGGGAACACTGGAGTGATTGTCATCGCAGCTACCAATCGA 3627 Query 175633 GTGGATATCCTTGATGACGCCCTCCTTCGCCCGGG 175667 || ||| | || |||| || | ||||| || || Sbjct 3626 GTTGATGTGCTGGATGCAGCTTTACTTCGGCCTGG 3592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520106565941600