Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq5899 205 3e-48 seq14425 113 1e-20 seq181 86.0 2e-12 >seq5899 Length=58143 Score = 205 bits (226), Expect = 3e-48 Identities = 264/363 (73%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTC 31503 ||||| || || | ||||||||| |||||||||| ||||||| | || || ||||| Sbjct 28810 GCCACTGCTCTTGCCGTCGAGCATCGTCAGCGTCGAATTGAAGTTCTGCAGAACGACTTC 28751 Query 31504 GGTTGTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTC 31563 ||| | |||||||| ||||| || |||||| ||||| || || |||| |||||| Sbjct 28750 GGTCGAATAGCGATCCTTGCCGTCCTTGTCCTGCCATTTGCGAGTCTGGAGCTGGCCCTC 28691 Query 31564 GATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGT 31623 |||||||||||| || ||||| ||||| || |||||| || |||| ||||||||| | Sbjct 28690 GATGTAAACCTTGGAGCCCTTCTTCAGATACTGCTCGGCAATCTTGCAAAGACCTTCGCT 28631 Query 31624 GAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCG 31683 ||||| ||||| | |||||| || || || || || |||||| | |||||| Sbjct 28630 GAAGATCACGACACGATGCCATTCCGTCTTTTCTTTCCGCTCGCCGGAATTCTTGTCGCG 28571 Query 31684 CCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGT---CTT 31740 |||| | || || ||||| | || || | ||||| | ||| | || || ||| Sbjct 28570 CCAGGTATCCGAGGTCGCGATGCTCAGATTCGCGATCGGGCGGCCGTCCTGCGTGCGCTT 28511 Query 31741 TCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGC 31800 |||||| || ||||||||||| | || | ||||||||||| |||||||| || || Sbjct 28510 ---GATTTCAGGGTCGGCGCCGAGGTTTCCAACCAGAATGACTTTATTGACGCTTCCCGC 28454 Query 31801 CAT 31803 ||| Sbjct 28453 CAT 28451 >seq14425 Length=44283 Score = 113 bits (124), Expect = 1e-20 Identities = 237/349 (68%), Gaps = 6/349 (2%) Strand=Plus/Plus Query 31458 TGTCGAGCATGGTCAG--CGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTGTAGCG 31515 |||||||||| ||||| || ||| | | ||||||| || || ||||| | ||| Sbjct 33432 TGTCGAGCATCGTCAGGACGCCGCCGT--ACCCGTTCAGGACAACCTCGGTCGAGTATTT 33489 Query 31516 ATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTT 31575 || ||||| || |||||| ||||| || || | | |||||| ||||||||||| Sbjct 33490 GTCCTGCCCGTCTTTGTCCTGCCATTTGCGAGTCTGTAACGCGCCCTCAATGTAAACCTT 33549 Query 31576 CGATCCCTTTTTCAGGTATTGCTC-GCAAACCTTGACGAGACCTTCGGTGAAGACGACGA 31634 ||| ||||||| ||| || | ||| || | || || | || || | ||| || | Sbjct 33550 CGAGCCCTTTTGCAGATACTTCTCTGCCACGCTGCAC-AACCCCTCATTCCAGATTACAA 33608 Query 31635 CGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGG 31694 ||| |||||| ||||| || || || ||||| | | ||| ||| |||||| Sbjct 33609 CGCGATGCCATTCGGTTTTTTCTTTTCGCTCGCCAGAGGCCTTGTCCTTCCACGTTTCGG 33668 Query 31695 AAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGGATTTCCGGAT 31754 | || || | || |||| || ||| | ||| | || || || | ||| || | Sbjct 33669 ACGTAGCGACGCTAAGGTTGACGACGGGCTTGCCGTCCTGAGTGCGGCGAACTTCTGGGT 33728 Query 31755 CGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 || ||| |||| |||||| |||| ||||| |||||||| |||||||| Sbjct 33729 CGCTGCCAAGATTGCCGATGAGAAGAACTTTATTGACGCTGCCGGCCAT 33777 >seq181 Length=116846 Score = 86.0 bits (94), Expect = 2e-12 Identities = 325/501 (65%), Gaps = 33/501 (7%) Strand=Plus/Plus Query 28522 CGCGCTGCCGGCATCAGGATTGGTCACGAGAAGCTTCAGGGTGCCTTCGGAGAAGTGGAA 28581 ||||||||||| ||| || ||||||||| ||| ||| |||| |||| | | Sbjct 98372 CGCGCTGCCGGAATCCGGGTTGGTCACGGACAGCACCAGCTTGCCGGCGGACAGCGCCAG 98431 Query 28582 CTTCATCGCCCGGCCGCGCTCGGTTGAAACCGACGACACACGGTCAACGGCCGAGGCGAT 28641 |||| || ||||| || |||| |||| || ||| || || || || || | ||| Sbjct 98432 TTTCACGGCGCGGCCACGTTCGGAAGAAATCGTCGAGACGCGATCGACAGCGGCCTCGAA 98491 Query 28642 TGCTTTGGCGTCCGCCGTCACGTCGGTGGCATTGTTGGCTGGGATGACCCGGACGTAGTC 28701 | || ||| | ||| || || | ||||| || ||||| ||| ||||||| Sbjct 98492 GTCCTTCTTGTCGACGATCAGTTCCTTGTCGTTGTTCTGCGGAATGACGCGGCCGTAGTC 98551 Query 28702 CGGGAACGTGCCGTCGATCAGTTTCGATACGAGGCGCGTC-CCGCCGACGGTGAAACAAA 28760 ||||| |||||||||||||||||||| | || | | |||||| |||||| | || Sbjct 98552 GGGGAATGTGCCGTCGATCAGTTTCGAGGTCA-GCACAACATCGCCGATGGTGAAGCGAA 98610 Query 28761 TCCTCGCATCGCTGAGCTCGACAAAAACGTCGCCATCTTTCGGCAAGATCTTCGA--AAG 28818 || | | | ||||||| | ||| | || || ||||||| | | Sbjct 98611 TCTTGCCCTGCGACAGCTCGATCTTCAGCTCGGCCTCGTT-------GTCTTCGATCAGG 98663 Query 28819 AG-------TCG-CAACTGTCTTGCGCGGAATGATCACGCCGGGCGCATCCGCGG-GAAC 28869 | ||| | || |||||||| || | ||||||||| ||| | || ||| | | Sbjct 98664 CGCTGCACTTCGCCCACGGTCTTGCGGGGCACGATCACGCCCGGCATACCCTCGGCGCTC 98723 Query 28870 ATGGTCGATCATCACGATCCGCTTAGCGAGGCGATGCCCGTCGGTGGCAA---CGAACAG 28926 | | | | | || | || ||||||||||| |||||||| || | || ||| Sbjct 98724 TTCGGC-AACGGCAGGTCGACCTGTGCGAGGCGATGACCGTCGGTCGCGACCGCGCGCAG 98782 Query 28927 CAT----GCC--GTCAGT---CGTGGGATGCATGTAAATGCCGTTTAGATAATAGCGCGT 28977 | | ||| | | || || || |||| || |||||||| ||||| ||||| || Sbjct 98783 CGTCGCGGCCTTGGCGGTGCCCGCGGCGTGCAGATAGATGCCGTTAAGATAGTAGCGGGT 98842 Query 28978 CTCTTCGGTTGAGACCGCAAA 28998 |||||||| |||| |||||| Sbjct 98843 TTCTTCGGTCGAGATCGCAAA 98863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149128921283760