Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq20028 114 9e-21 seq497574 104 2e-17 seq62192 91.5 1e-13 seq203 91.5 1e-13 seq7247255 86.0 4e-12 seq340010 84.2 2e-11 seq134495 84.2 2e-11 seq119950 84.2 2e-11 seq20237 84.2 2e-11 >seq20028 Length=39891 Score = 114 bits (126), Expect = 9e-21 Identities = 163/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 107539 TTTATAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCG 107598 ||||| | || || || ||||| || ||||| ||||| | || ||||| || || || Sbjct 30969 TTTATTAAAGCTTCAAGATGCAGATCTTTGTTAAAACCCTCACTGGCAAGACAATCACTC 30910 Query 107599 TCGAAACGGAG-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAA 107657 ||||| ||| ||| || || ||| | | || || |||||| ||||| ||| Sbjct 30909 TCGAAGTCGAGAGCTCT-GACACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAA 30851 Query 107658 GGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAA 107717 || | ||| || |||||||| ||||| | ||| ||||| ||||| ||||| | | | Sbjct 30850 GGGATTCCCCCAGACCAGCAGAGGCTTATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGA 30791 Query 107718 ACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||||||||||| |||||||| ||||| | ||| |||| Sbjct 30790 ACCCTGGCGGACTACAACATCCAAAAGGAATCTACCCTCCACCTGGT 30744 Score = 98.7 bits (108), Expect = 7e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | ||| |||||||||||| || || | ||| ||||| ||||||||| Sbjct 30350 GATAAGGAAGGAATTCCCCCGGATCAGCAGAGGCTAATCTTTGCTGGTAAGCAGCTGGAG 30291 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || || |||| |||||||||||||| ||||| || || ||||| | ||| Sbjct 30290 GACGGCAGGACCTTGGCTGACTACAACATTCAGAAGGAATCAACCCTGCACCTTGTG 30234 >seq497574 Length=4355 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| || || |||||||| || || | ||| ||| ||| Sbjct 2344 ATGCAGATATTTGTGAAAACGTTGACGGGCAAAACGATCACTCTGGAAGTTGAGAGCTC- 2402 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | |||||| |||||| || || ||||| | || ||||| Sbjct 2403 CGATACTATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCA 2462 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| ||||||||||| | ||| | || || ||||| Sbjct 2463 GCAGAGGCTGATATTTGCTGGTAAGCAGCTGGAGGATGGGCGAACTCTCGCCGATTACAA 2522 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| ||||||||||| | ||| | || ||| | |||| || ||| Sbjct 2523 TATTCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGGA 2571 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| | || ||||| |||||||| ||||| ||| ||| Sbjct 2115 AATGCAAATCTTTGTGAAAACCCTGACCGGCAAGACCATTACGCTCGAAGTTGAGAGCTC 2174 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | || || ||||||| || || || || | || ||||| Sbjct 2175 T-GATACTATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGGATTCCTCCGGATC 2233 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | || | ||| || || || || || || | | || |||||||||| | Sbjct 2234 AGCAGAGGTTGATCTTTGCAGGAAAGCAACTTGAAGATGGGAGGACTCTGGCGGACTATA 2293 Query 107734 ACATTCAAAAGGAGTCTACGTTGCA 107758 ||||||| ||||||||||| |||| Sbjct 2294 ACATTCAGAAGGAGTCTACCCTGCA 2318 >seq62192 Length=24286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| |||||| | || ||||| ||||| || ||||| || | Sbjct 19874 ATGCAAATCTTTGTGAAAACTCTGACTGGCAAGACCATCACGCTCGAAGTTGAAAACTCC 19815 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || |||||| ||||| || || | || ||||||| Sbjct 19814 GATACTATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGGATTCCTCCGGATCAG 19755 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || || || || || || | | || |||||||||| ||| Sbjct 19754 CAGAGATTAATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTTTGGCGGACTATAAC 19695 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| ||||||||||| |||| Sbjct 19694 ATTCAGAAGGAGTCTACCCTGCA 19672 >seq203 Length=115218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || |||||||| ||||| || | || | ||| ||| Sbjct 20924 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGATTGAGAGCTTT 20983 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || ||||||| || || ||||| | || ||||| Sbjct 20984 -GATACTATTGATAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCA 21042 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| ||| || || ||||||||||| | ||| |||| || || || Sbjct 21043 GCAGAGGCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGGCGAACCCTGGCCGATTATAA 21102 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||| |||||||| || | ||| | || ||| Sbjct 21103 CATTCAGAAGGAGTCCACCCTCCACCTTGTCTTG 21136 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||||||||| | || ||||| || || || | ||| ||| ||| Sbjct 20696 ATGCAAATCTTTGTCAAAACCCTGACCGGCAAGACAATCACACTTGAAGTTGAGAGCTCA 20755 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || |||||| ||||| || || | || |||||| Sbjct 20756 -GACACTATTGATAACGTGAAGGCCAAGATTCAGGATAAGGAGGGGATTCCTCCGGATCA 20814 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| ||||| || || || || | || || | || |||||||| Sbjct 20815 GCAGAGATTGATCTTTGCAGGTAAGCAACTTGAAGATGGCAGGACTCTAGCCGACTACAA 20874 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 |||||| ||||| ||||| |||| Sbjct 20875 CATTCAGAAGGAATCTACACTGCA 20898 >seq7247255 Length=252 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| | || ||||| ||||| || ||||| ||| ||| Sbjct 1 ATGCAAATCTTTGTGAAAACCCTGACGGGCAAGACCATCACGCTCGAAGTTGAGAGCTC- 59 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || |||||| || || || || | || |||||| Sbjct 60 CGATACGATTGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGGATTCCTCCGGATCA 119 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || ||||| || || || | | || |||||||||| || Sbjct 120 GCAGAGATTGATCTTTGCAGGGAAACAACTTGAAGATGGGAGGACTTTGGCGGACTATAA 179 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 |||||| || |||||||| |||| Sbjct 180 CATTCAGAAAGAGTCTACCCTGCA 203 >seq340010 Length=6563 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| | || ||||| ||||| || ||||| ||| ||| Sbjct 4237 AATGCAAATCTTTGTGAAAACCCTGACCGGCAAGACCATCACGCTCGAAGTTGAGAGCTC 4296 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||||| | | | || || |||||| ||||| || || | || ||||| Sbjct 4297 -CGATACTATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGGATTCCTCCGGATC 4355 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||| | || | ||| || || || || || || | | || |||||||||| | Sbjct 4356 AGCAGAGATTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTCTGGCGGACTATA 4415 Query 107734 ACATTCAAAAGGA 107746 ||||||| ||||| Sbjct 4416 ACATTCAGAAGGA 4428 >seq134495 Length=14222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || |||||||| ||||| || | || ||| ||| Sbjct 3925 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCT 3866 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || |||||| || || ||||| | || ||||| Sbjct 3865 -GATACTATTGATAACGTCAAGGCGAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCA 3807 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || |||| |||||| || ||||||||||| | | ||| | || || || || Sbjct 3806 ACAGAGGCTCATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGAACCCTCGCCGATTATAA 3747 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||| ||||| | ||| | || ||| | |||| || || Sbjct 3746 CATTCAGAAGGAATCTACCCTTCACCTTGTCTTGCGTCTGCGTGGTGG 3699 >seq119950 Length=15500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| || || || ||||| |||||| | || ||| ||| Sbjct 12656 ATGCAGATCTTTGTGAAAACCTTGACTGGGAAAACTATTACCTTGGAGGTAGAGAGCTCT 12715 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || ||| |||||| ||||| || || | ||| || || Sbjct 12716 -GACACCATTGATAACGTGAAAGCGAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCA 12774 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| ||| ||||| |||||||| || | || |||| || || || Sbjct 12775 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGTACTCTGGCTGATTATAA 12834 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||||||||| ||||| |||| Sbjct 12835 CATCCAGAAGGAGTCTACTCTGCACCTGGT 12864 >seq20237 Length=39773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| |||| || || |||||||| | ||| ||| ||| | Sbjct 30268 ATGCAGATCTTTGTTAAAACACTAACTGGAAAGACCATTACATTGGAAGTTGAGAGCTCG 30327 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||||| || || ||||| | ||| || || Sbjct 30328 -GACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 30386 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || ||||| ||||||||||| | | || |||| |||||||| Sbjct 30387 GCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGGACCTTGGCTGACTACAA 30446 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||| || || |||| |||| Sbjct 30447 TATTCAGAAGGAATCGACCCTGCATCTGGT 30476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 349030399705855