Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq36261 143 5e-29 seq7549 113 9e-20 seq5661119 98.7 2e-15 seq3615 98.7 2e-15 seq9197 89.7 1e-12 seq81334 87.8 4e-12 >seq36261 Length=32380 Score = 143 bits (158), Expect = 5e-29 Identities = 377/562 (67%), Gaps = 19/562 (3%) Strand=Plus/Plus Query 279784 ACAAACTAATGTGACTTGTGAAGAATTTATTGATAAAGAACTGATCCATTTTTCTAATTA 279843 ||||| || || |||| |||| ||| || |||| ||||| | | ||| |||| Sbjct 2613 ACAAAGCAA-GTCACTTACCAAGACTTTGTTAATAAGGAACTAGTTCTATTTAGTAATCT 2671 Query 279844 TGATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGAT 279903 ||| | ||||| || || | | |||||||||||||| ||| || ||||| | Sbjct 2672 CGATAACGAACGTTCAATACCATCTGTTATGGATGGTTTGAAGCCTGGCCAACGTAAAGT 2731 Query 279904 TATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGT--GTTGCTCAGTTAGCA 279961 ||||||| |||||| ||||| || ||| || | | || || || || || Sbjct 2732 CATATTCACTTGTTTTGTCAGAAA--TGATAAGCGAGAGGTGAAAGTCGCACAATTGGCT 2789 Query 279962 GGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATT 280021 |||| |||| | ||| | | ||| |||||||||||||| || || |||| ||||| Sbjct 2790 GGTTCTGTTGCCGAAAGATCGGCTTACCATCACGGTGAAGCTTCACTGCAAGCAACTATT 2849 Query 280022 GTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGT 280081 || | | || ||||| ||| | | || ||||| |||| ||||| ||| | ||| Sbjct 2850 GTCAATTTAGCACAAGACTTTGTAGGCTCTAACAATATAAACTTGCTTCAACCTATCGGT 2909 Query 280082 CAATTTGGTTCTCGTATTCA-CAATGGAAAAGATCATGGTAGTGCTCGTTACATACATAC 280140 || |||||| |||| ||| | ||||||||| || ||||||||||||||| | || Sbjct 2910 CAGTTTGGTACTCG-ATTAAGGGGAGGAAAAGATGCTGCTAGTGCTCGTTACATCAACAC 2968 Query 280141 ATGTCTTTCAGATA-TTACAAACAAGTTATTTATCAATTCTGATAATGCTTCA---TTAG 280196 | | || | | | |||| ||| |||| | | |||| ||| | || || Sbjct 2969 A-ATGTTGAATCCACTGACAAGAAAG--ATTT-TTAGACCTGAAGATGATCCAATTTTGC 3024 Query 280197 AGTGGCTAGAGGATGATGGTCT--TGCTATTGAACCAACATATTATGCTCCAATTATCCC 280254 | | || || ||||| ||| || || || ||| || |||||| || ||||| || Sbjct 3025 ATTACCTCGAAGATGACAATCTCATGGTA--GAGCCAGAATTTTATGCACCCATTATTCC 3082 Query 280255 TATGATTCTTGTTAATGGTGCTCAAGGAATTGGAACAGGTTATTCTACATCTATCCCAAT 280314 ||| || | || ||||||||| |||| ||||| || || | ||||| | ||||| Sbjct 3083 AATGGTTTTAGTGAATGGTGCTGAAGGTATTGGTACTGGATGGTCTACTAAAGTACCAAT 3142 Query 280315 GTACAATCCAATTGATATTATA 280336 ||||||||| | || |||||| Sbjct 3143 GTACAATCCCAAAGAAATTATA 3164 >seq7549 Length=54168 Score = 113 bits (124), Expect = 9e-20 Identities = 138/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | ||||| |||||| | ||||| || ||||| ||| Sbjct 23821 AGGCATTTGAATGATGGTGACTTTGTTCTTTTCAATCGACAACCTAGTCTTCATAAGATG 23880 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423 ||||| |||| || | ||||| | | | | ||||||||||| || ||| | Sbjct 23881 TCTATCATGGGGCACAGGATCAAAATCATGCCATACTCAACATTTCGATTGAACTTGTCA 23940 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 23941 GT-CACAT-CACCGTATAATGCTGATTTTGATGGAGATGAAATGAATATGCATGTACCCC 23998 Query 305484 AATCA 305488 ||||| Sbjct 23999 AATCA 24003 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAA--TGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATG 305462 ||||||||||| || ||| ||| | | | || |||||||| |||||||||||||||| Sbjct 24055 ACATTTCGATTGAACTTGTCAGT-CACAT-CACCGTATAATGCTGATTTTGATGGAGATG 24112 Query 305463 AAATGAATATGCATGTACCTCAATCA 305488 ||||||||||||||||||| |||||| Sbjct 24113 AAATGAATATGCATGTACCCCAATCA 24138 >seq5661119 Length=297 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/185 (73%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||||||||| ||| | || || |||||| | |||| || ||||| ||| Sbjct 212 AGACATTTGAATGATGGTGACTTTGTCCTTTTCAATCGACAACTTAGTCTTCATAAGATG 153 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA--A 305423 ||||| |||| || | ||||| | | | | ||||||||||| || || | Sbjct 152 TCTATCATGGGGCACAGGATCAAAATCATGCCATACTCAACATTTCGATTGAACTTATCA 93 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| |||||||||||||||||||| |||||||||||||| | Sbjct 92 GT-CACAT-CACCGTATAATGCTGATTTTGATGGAGATGAAATAAATATGCATGTACCCC 35 Query 305484 AATCA 305488 ||||| Sbjct 34 AATCA 30 >seq3615 Length=65756 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/185 (73%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| |||| ||||| |||||| | ||||| || || || ||| Sbjct 33375 AGGCATTTGAATGATGGAGATTTTGTTCTTTTCAATCGACAACCTAGTCTTCACAAGATG 33316 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423 ||||| |||| || | ||||| | | | | ||||||||| |||| ||| | Sbjct 33315 TCTATCATGGGGCACAGGATCAAAATCATGCCATACTCAACATTTCGACTAAACTTGTCA 33256 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 33255 GT-CACATCC-CCATATAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTACCCC 33198 Query 305484 AATCA 305488 | ||| Sbjct 33197 AGTCA 33193 >seq9197 Length=51094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||| ||||||| || ||||| |||||||| |||| || | | | ||| Sbjct 1382 GTTATTTTTAATCGGCAACCCAGTCTCCATAAGATGTCTATCATGGGGCACAGAATAAAA 1441 Query 305390 GTATTATCTGGATTGACATTTCGATTAAAT--GTAAGTGCTTGTACGCCTTATAATGCGG 305447 || | | | ||||||||||| ||| || |||| ||||| || || || | Sbjct 1442 GTGATGCCATACTCAACATTTCGATTGAATTTGTCAGTGACA--ACGCCATACAACGCTG 1499 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||| ||||||||||| |||||||||||||||||||| || Sbjct 1500 ATTTCGATGGAGATGAGATGAATATGCATGTACCTCAGTC 1539 >seq81334 Length=20348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/198 (71%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| | ||| |||| |||||| | ||||| || ||||| ||| Sbjct 7861 AGGCATTTGAATGATAGTGACCTTGTTCCTTTCAATCGACAACCTAGTCTTCATAAGATG 7802 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423 ||||| |||| |||| | ||| | | | | ||||||||||| || | | | Sbjct 7801 TCTATCATGGGGCATAGGATGAAACTCATGCCATACTCAACATTTCGATTGAACTTTTCA 7742 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || ||| | ||| ||| ||||||||||||||||||||||||||||||||||| | Sbjct 7741 GTTACATTAC--CGTATGATGTTGATTTTGATGGAGATGAAATGAATATGCATGTACC-C 7685 Query 305484 AATCAAAGGTTACAATGA 305501 | ||| | | || |||| Sbjct 7684 AGTCATATGAAACTATGA 7667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1030894713935895