Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq2620947 96.9 8e-16 seq3673 95.1 3e-15 >seq2620947 Length=624 Score = 96.9 bits (106), Expect = 8e-16 Identities = 101/130 (78%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 18133 CCCGAGTCCGCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTC 18192 ||||| |||| ||| |||| || ||||| ||||| ||||||| ||| ||||| || ||| Sbjct 133 CCCGAAGCCGCGTCCGCGCCTATATGCGCCTTCATGCCGAAATACCATTGGTTGCCCTTC 74 Query 18193 TTGGTCTGGTGCATCTCGGGGTCGCGC---TTGCCGCTGCCATTCTTGGTCGAGCTGGGC 18249 ||||||| | ||||||||| |||||| || || ||| ||||||||||| ||| Sbjct 73 CTGGTCTGCTTCATCTCGGGATCGCGCGACTT--CG-TGCGGTTCTTGGTCGATGGCGGC 17 Query 18250 GCGGCAATCA 18259 || ||||||| Sbjct 16 GCAGCAATCA 7 >seq3673 Length=65547 Score = 95.1 bits (104), Expect = 3e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38527 TAGGCGCCTTCCACCTTGCTTTCCACTGCGTGCGCCAGCGCCATCTCGGCGAGCGAGTCT 38586 |||||| | ||| ||||| | | | | || ||||| ||||| ||| ||||| || Sbjct 3508 TAGGCGGCCTCCGCCTTGTTCTTGATGGTATGGGCCAGTGCCATTTCGACGAGCTCGTTC 3449 Query 38587 GGGTATTCGGTGCACTCGGCCACCCAGTCGCGGAACGTCGACCGGAAGCCGTGCACGGTG 38646 || || ||||| ||||| |||| |||||||| ||||| |||||||| ||||| ||| Sbjct 3448 GGATACTCGGTCGTTTCGGCGGCCCAATCGCGGAATGTCGAGCGGAAGCCATGCACCGTG 3389 Query 38647 ATCCCTTCGTAGCCCATGCGGTCGAGCATGTTCAGCATGGCCATGTTCGATAGCGGCTTG 38706 | || | ||| || | ||| | | || ||||||||||||||| ||||| ||| Sbjct 3388 AGGTCTGAACGGTTCATCCGCTTGAGGAGGGCCAACATGGCCATGTTCGAGAGCGGTTTG 3329 Query 38707 CCTTTCTTCTGGCCGGGGAACAGGTAGCCG 38736 | | | ||| || || || | |||| || Sbjct 3328 TCGATTTCCTGCCCAGGAAAGACGTAGTCG 3299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112313210654760