Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq94137 206 2e-48 seq4712 111 1e-19 >seq94137 Length=18398 Score = 206 bits (228), Expect = 2e-48 Identities = 394/571 (69%), Gaps = 46/571 (8%) Strand=Plus/Minus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 |||||||| ||||||||||| ||||||||||| || || || || || | || ||| Sbjct 8975 ATCTTCGGCCATCAGATGCGGTTCAATCTGGCATCGGGTTTCCCGCTGCTGACAACCAAG 8916 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 ||||| ||||||||||||||| || |||||| |||||||| || || || || ||| Sbjct 8915 AAGCTTCATCTGAAGTCGATCGTCCACGAACTGCTGTGGTTTCTGGCGGGTGACACCAAC 8856 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 ||||| || || |||| || ||| || ||||| || |||||||| | || ||| Sbjct 8855 ATCAAATACCTGAACGACAACGGCGTTCGCATTTGGGACGAGTGGGCTGACGAGAACGGC 8796 Query 142420 AACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGA 142479 || ||||| || ||||| ||| ||||||| ||| ||| | || ||| | Sbjct 8795 AATCTCGGCCCGGTCTATGGCTCGCAGTGGCGGTCATGG------CCCG----CGCCG-- 8748 Query 142480 GATGACGTCACAGACGAACCGATCGATCAGA--TCCGCCG-GATCATTACTGA-CTTGAA 142535 |||| || || ||||||| |||| ||| | |||| | ||| | ||| Sbjct 8747 GATGGCGGCA---------CGATCGACCAGATTTCCAATGTGATCGAGA-TGATCCGGAA 8698 Query 142536 GAAGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGA 142595 || ||| | || || | | ||||||| ||||||||| || || ||||||||| | Sbjct 8697 AAA---TCCGGACTCGCGCAGGCTGATCGTCAGCGCGTGGAATCCGGCCGAAGTCGACAA 8641 Query 142596 CATGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAA---GAAGCG 142652 ||||| | || || || ||| ||||||| ||| | |||| |||| ||| Sbjct 8640 GATGGCGTTGCCGCCATGCCACTGCCTGTTCCAGTTCTATGTCG---CGAACGGCAAG-- 8586 Query 142653 TCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACAT 142712 || || |||||||| || ||||| || || || |||||||||||| |||||||| || Sbjct 8585 -CTCTCGTGCCAGCTCTACCAGCGCTCAGCCGATGTGTTCCTCGGCGTGCCGTTCAATAT 8527 Query 142713 TGCTTCGTACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCG 142768 || || ||||| || ||||| | | | || | ||| | | ||| ||| | | || Sbjct 8526 CGCGTCCTACGCCCTGCTCAC---GATGA-TGGTGGCGCAGGTGACCGGACTGAAGCCCG 8471 Query 142769 GAGACTTCGTCCACACCTTCGGCAATTCGCA 142799 |||||||||| || | |||||| || |||| Sbjct 8470 GAGACTTCGTGCATTCGTTCGGCGATACGCA 8440 >seq4712 Length=61641 Score = 111 bits (122), Expect = 1e-19 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 148838 TCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGCGATGACATCAAGG 148897 |||||||||| || || |||||||||||||| ||| |||| |||||||||| Sbjct 5509 TCATCGAGCGCATCGAGCGTCTCGAGGAAGAGAAGAAGACCATCAGCGACGACATCAAGG 5450 Query 148898 ACGTCTACGGCGATGCCAAAGGAAATGGCTTCGACACCAAGATCTTGAAGAAGGTCATCA 148957 ||||||| ||||| ||||| || || || |||||| |||| || | ||||| Sbjct 5449 ACGTCTATGGCGAGGCCAAGGGCAACGGTTTCGACGTCAAGGCGCTGCGCACCATCATCC 5390 Query 148958 ACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCAATCCTCGATACGTAT 149016 ||| |||||| |||||| | ||||| |||| ||||| | ||||| || |||||| Sbjct 5389 GCATGCGCAAGCAGGATGCCGACGAGCGTCAGGAACAGGAAACGATCCTGGAGACGTAT 5331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 436349623193200