Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq8054 93.3 3e-14 seq497574 87.8 1e-12 seq111374 82.4 6e-11 >seq8054 Length=53166 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| |||||| | ||||| || | |||||| | ||||| || ||| | Sbjct 38115 ATGCAAATCTTTGTCAAAACACTGACCGGCAAGACAATCACGCTTGAAGTTGAGAGCTCA 38174 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || ||| ||| ||||| ||||| || || |||||||| Sbjct 38175 -GACACTATTGATAACGTGAAGGCAAAGATTCAGGATAAGGAGGGGATTCCTCCCGATCA 38233 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||||||| | || | | || || ||||| ||| ||| || | | | ||| | |||| Sbjct 38234 GCAAAGATTGATCTTTGCAGGGAAGCAACTTGAAAATGGGAGGACTCT-AGCAAACTACA 38292 Query 25353 ATATTCAAAAAGAATCCAC 25371 | |||||||| ||||| || Sbjct 38293 ACATTCAAAAGGAATCTAC 38311 >seq497574 Length=4355 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || || ||| ||||||| | ||||| || | | Sbjct 2344 ATGCAGATATTTGTGAAAACGTTGACGGGCAAAACGATCACTCTGGAAGTTGAGAGCTCC 2403 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | |||||| || ||| || || || || || || || |||||| Sbjct 2404 GATACTATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 2463 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | || || || || || |||| ||| | || |||||||||| Sbjct 2464 CAGAGGCTGATATTTGCTGGTAAGCAGCTGGAGGATGGGCGAACTCTCGCCGATTACAAT 2523 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 ||||| || || || || |||| Sbjct 2524 ATTCAGAAGGAGTCTACACTTCA 2546 >seq111374 Length=16363 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || ||||| || | ||||| | ||||| || | Sbjct 8124 ATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACTATCACTCTTGAAGTTGAGAGCTCG 8065 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| ||||| ||||| || || || |||||| Sbjct 8064 GATACAATTGACAATGTGAAGTCCAAGATTCAGGATAAGGAGGGGATTCCTCCAGATCAG 8005 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | | || |||||||||||||||| || | | | ||||||||| Sbjct 8004 CAGAGATTGATCTTTGCTGGGAAACAACTCGAAGATGGAAGGACTCTTGCAGATTACAAT 7945 Query 25355 ATTCAAAAAGAATCCACC 25372 ||||| || ||||| ||| Sbjct 7944 ATTCAGAAGGAATCTACC 7927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 389475129253235