Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq220612 118 1e-21 seq6585 100 3e-16 seq177539 86.0 7e-12 seq9369708 84.2 2e-11 seq2888806 84.2 2e-11 seq1818012 84.2 2e-11 seq1734642 84.2 2e-11 >seq220612 Length=9589 Score = 118 bits (130), Expect = 1e-21 Identities = 293/442 (66%), Gaps = 2/442 (0%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || ||||| | | || ||||||| ||||| | | || || || || Sbjct 3258 ATCAAAACGCCCTGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCAGC 3199 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | ||||| |||||||| || || || | ||||| | Sbjct 3198 AATCACAATGATACCAGTGTTCCCTTCAAAACCATCCATTTCTGTAAGAAGCTGATTCAG 3139 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCGTTGCTTGCCCACCG 11630 |||||||||| |||||||||| || | || |||| | | ||| | || || | Sbjct 3138 GGTTTGTTCTCGCTCATCATTTCCTCCACCTATT-CCAGTTCCTCTCTGCCTACCAACTG 3080 Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690 ||||||| ||||| | ||| ||||| || || |||||| ||| ||| || || | Sbjct 3079 CATCAATTTCATCGACGAAAACAATGCAAGGGGCATTTTCTTTGGCCTTTTTGAACAGGT 3020 Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750 | || || || || || | ||| ||||||||||| ||||| | | | ||| Sbjct 3019 CACGCACTCTAGATGCTCCGATACCGACAAACATCTCAACAAACTCAGACCCTGAGATAG 2960 Query 11751 GGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTAC 11810 || ||| || ||| | ||| || || ||||| ||| || | ||||| || || | Sbjct 2959 AGAAGAAGGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTTCCCAGTCC 2900 Query 11811 CTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCT 11870 |||| |||| | ||||| | ||| || || || ||| || || | | |||| Sbjct 2899 CTGGTGGACCCACAAGAAGAACTCCTTTAGGAATACGAGCTCCAATTGCAGTAAACCTCT 2840 Query 11871 CGGGTTGCTTGAGAAAATCCAC 11892 | |||| ||| || || || || Sbjct 2839 CTGGTTTCTTCAGGAACTCAAC 2818 >seq6585 Length=56338 Score = 100 bits (110), Expect = 3e-16 Identities = 188/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 11462 CCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACA 11521 || || ||||| | || |||| || | ||| || ||||| || || || || || | Sbjct 3592 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTAGCTGCGATGACAATC 3651 Query 11522 ATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCT 11581 | ||||| | ||||| ||||||||||| || || ||||| || | ||| |||||| Sbjct 3652 ACTCCAGTGTTCCCTTCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTCT 3711 Query 11582 CTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATC 11638 | |||||||| || |||| || | | | ||| | ||||| ||||| | Sbjct 3712 CGTTCATCATTGCCT---CCACCAATTCCTGTTCCCCTCTGCCTTCCCACTGCATCGAGT 3768 Query 11639 TCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACC 11698 ||||| ||||| | |||||| ||| |||||| || | | || ||||| |||||| Sbjct 3769 TCATCTATGAAAATAATACAAGGTGCATTTTCCTTTGCCCTCTTGAAAAGATCACGAACC 3828 Query 11699 CTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || ||| || || || ||||||||||| | ||| Sbjct 3829 CTAGAGGCTCCTACTCCTACAAACATCTCTATAAA 3863 >seq177539 Length=11366 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 111014 TCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 111072 || ||||| ||||||| | || | |||||||||| ||| || || || |||||||| Sbjct 5122 TCTTCTGAGTCAAATGGCATACCAAG-CAAAATAAATGTATCAGCAAGGCCCTGAACACC 5180 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATT 111132 | |||||||||||||| |||||||| |||| ||||| || || ||||| |||| Sbjct 5181 AATGCCAATAGGTCTGTGACGCATATTTGACTGCTTTGCAGTTTCTACAGGATAGTAATT 5240 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 ||||||| | ||| || |||| ||||| || ||||| Sbjct 5241 CACATCAATGATTTTGTTCAGGTTTTGAGTAACTATTGATGTGA 5284 >seq9369708 Length=212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346 ||| |||||||||| | ||||||||||||||||||||| ||| ||||||||||| || Sbjct 125 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAATGACCTAGGTTCAAATCCCAGT 66 Query 145347 AGGAGCTTTACCCA 145360 |||| ||||| ||| Sbjct 65 AGGACCTTTAGCCA 52 >seq2888806 Length=556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346 ||| |||||||||| | |||| ||||||||||||||| ||||| ||||| ||||| ||| Sbjct 466 TATGGTGTAGTGGTTAGCACTCTGGACTTTGAATCCAGCAACCTGGGTTCGAATCCCGGT 525 Query 145347 AGGAGCTTTACCCA 145360 |||| ||||| ||| Sbjct 526 AGGACCTTTAGCCA 539 >seq1818012 Length=1111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346 ||| |||||||||| | ||||||||||||||||||||| ||| ||||||||||| || Sbjct 664 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAATGACCTAGGTTCAAATCCCAGT 605 Query 145347 AGGAGCTTTACCCA 145360 |||| ||||| ||| Sbjct 604 AGGACCTTTAGCCA 591 >seq1734642 Length=1176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346 ||| |||||||||| |||||| |||||||||||||||| ||| |||||||||| ||| Sbjct 115 TATGGTGTAGTGGTTATCACTCTGGACTTTGAATCCAATGACCTGAGTTCAAATCCTGGT 56 Query 145347 AGGAGCTTTACCCA 145360 |||| ||||| ||| Sbjct 55 AGGACCTTTAGCCA 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547536392772000