Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq220612 125 7e-24 seq178673 98.7 1e-15 seq6585 95.1 1e-14 >seq220612 Length=9589 Score = 125 bits (138), Expect = 7e-24 Identities = 305/452 (67%), Gaps = 10/452 (2%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| || | | || ||||||| |||||| | | || || || || Sbjct 3258 ATCAAAACGCCCTGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCAGC 3199 Query 9586 GATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || |||| ||||| || ||| | |||||||||||||| ||||| | ||| || || | Sbjct 3198 AATCACAATGATACCAGTGTTCCCT-TCAAAACCATCCATTTCTGTAAGAAGCTGATTCA 3140 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 |||||||| || |||||||| || | || |||| | | ||| | || || Sbjct 3139 GGGTTTGTTCTCGCTCATCATTTCCTCCACCTA-TTCCAGTTCCTCTCTGCCTACCAACT 3081 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 |||||||| ||||| | ||| || ||||| || |||||| || || || || Sbjct 3080 GCATCAATTTCATCGACGAAAACAATGCAAGGGGCATTTTCTTTGGCCTTTTTGAACAGG 3021 Query 9764 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 || || ||| || | || || | ||| ||||||||||| ||||| | | | | | Sbjct 3020 TCACG--CACTCTAGATGCTCCGATACCGACAAACATCTCAACAAACTCAGACCCTG-AG 2964 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || | || |||||| ||| || ||| || |||||||| ||| || | |||||| || Sbjct 2963 ATAGAGAAGAAGGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTTCCCA 2904 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9940 || ||||| |||| | || || | ||| ||||| || ||| || || | Sbjct 2903 GTCCCTGGTGGACCCACAAGAAGAACTCCTTTAGGAATACGAGCTCCAATTGCAGTAAAC 2844 Query 9941 CTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||||| |||| ||| || || || || | ||| Sbjct 2843 CTCTCTGGTTTCTTCAGGAACTCAACCACTTC 2812 >seq178673 Length=11302 Score = 98.7 bits (108), Expect = 1e-15 Identities = 246/366 (67%), Gaps = 17/366 (5%) Strand=Plus/Plus Query 7283 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTG 7340 || || || ||| | || |||||| ||||| | ||| || | ||||| ||| ||| Sbjct 3320 CCCCAGAATGAGAACACCCCCTTCCACCCAAGAA--GTCCTTATGCTGTCTCCAAGCTTG 3377 Query 7341 CGGCACATTGGC--TC-GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCG 7397 | || |||||| || ||||| ||| | ||| | || ||| ||||||| ||| | Sbjct 3378 CAGCCCATTGGTATTCTGTCAAC---TACAGAGAGGCATATGGAATGTTTGCCTGCAATG 3434 Query 7398 GAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTA 7457 | ||||| |||||||| || || || || |||||| |||||||||||| |||||| | Sbjct 3435 GGATCCTGTTCAACCACGAGTCCCCAAGGAGAGGTGAGAACTTTGTCACAAGGAAGATCA 3494 Query 7458 CCGAGGGTATCAAACAAATCATGAAGGG---TGAAAAGGAGTTCATTGAATTGGGTAACA 7514 || || | | ||||| | || | | ||| || | | ||||| || Sbjct 3495 CCAGGGCTGTGGGGAGAATCAAAATTGGGCTTCAGAAGAAG---CTGTATTTGGGCAATC 3551 Query 7515 TAAACGCGGCGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGC 7574 | || || | || |||||||| || ||||||||| || || |||||| | ||| Sbjct 3552 TCAAGGCCTCCAGGGATTGGGGATTTGCTGGGGACTATGTGGAGGCAATGTGGTTGATGG 3611 Query 7575 TTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATACAG-TGAGG 7633 | || ||||| | |||| || ||||| || || || | ||| | |||||| | ||||| Sbjct 3612 TGCAGCAAGATAAGCCCGATGACTATGTTGTTGCCACTGATGATAGCCATACCGTTGAGG 3671 Query 7634 CGGTTC 7639 | ||| Sbjct 3672 AGTTTC 3677 >seq6585 Length=56338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || || ||||| | || |||| || | |||||| ||||| || || |||||||||| Sbjct 3592 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTAGCTGCGATGACAATC 3651 Query 9596 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9654 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 3652 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 3710 Query 9655 CCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAAT 9711 ||||||||||| || |||| || | | | ||| ||||||| ||||| | Sbjct 3711 TCGTTCATCATTGCCT---CCACCAATTCCTGTTCCCCTCTGCCTTCCCACTGCATCGAG 3767 Query 9712 CTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTA 9770 ||||| ||||| | || || ||| |||||| | | ||| ||| ||||| || | Sbjct 3768 TTCATCTATGAAAATAATACAAGGTGCATTTTCCTTTGCCCTCTTGAAA-AGATCACGAA 3826 Query 9771 CACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 | | ||| || || || ||||||||||| | ||| Sbjct 3827 CCCTAGAGGCTCCTACTCCTACAAACATCTCTATAAA 3863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508503570641800