Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_028103.1 Length=32939 Score E Sequences producing significant alignments: (Bits) Value seq416950 614 1e-171 seq1393656 194 3e-45 >seq416950 Length=5269 Score = 614 bits (680), Expect = 1e-171 Identities = 1609/2430 (66%), Gaps = 86/2430 (4%) Strand=Plus/Plus Query 5062 TCCCAGAGTTCTGTGACGTGTTCTACGGCA-TCTCGATCCAGTAGATTTCCTGGTTTCTT 5120 ||||| |||||| | || ||||| |||||| | || ||||| | | || | ||||||| Sbjct 340 TCCCACAGTTCTTTTACATGTTCCACGGCAGTGTC-ATCCAACATACATCGTTGTTTCTT 398 Query 5121 GGGTTGGGTTGGCTGTTGCTGTAAGGAACCAGCCGGTGGGCGTCCAGAGGTGTC----AG 5176 ||||| ||||| || || |||||| | ||| |||||| |||| | |||| || Sbjct 399 GGGTTTGGTTG-CTTTTCGAGTAAGGCATCAGGCGGTGGCCGTCTA----TGTCTACAAG 453 Query 5177 CGTCATGTCCTTCCAGGGGCGGAGGGTTCTCGTGAGTGTGGTCTCCGTTACGGTGAAAGG 5236 ||| |||| ||||| || | | || | ||| | || || || || || ||||| || Sbjct 454 GGTCTTGTCTTTCCAAGGCCTCACTGTGCGCGTTAAAGTTGTTTCGGTGACTGTGAACGG 513 Query 5237 GTGTGCTCCGGGTTGGGCGCTTGCTAGGGTGCGCTTCAAACTCATCCGACTCGTGGAGAA 5296 | || | |||| | || ||||| || || ||||||| || || ||| || Sbjct 514 GGCCGCGTTGCTTTGGTTCGTAGCGAGGGTCCGTTTTAAACTCAGGCGGCTGGTGTGAAA 573 Query 5297 CTGTTCGTTTCCTCCCTGGTAGTCGGCAAGGTAACATTTCACTAAAAGGTCGTAGC-TGA 5355 | | | | || ||| ||| | | ||| ||||| | ||| ||| || | | | Sbjct 574 GCGCTGGCTCCCCTGCTGCGCGTCAGACAAGTAGCATTTAGCCAAAGTGTCATAACATAA 633 Query 5356 GGGACTCTGCCGCGTGACCCTTGGCTCGAAGTTTTCCTTTGGAGACGTGTCCGCAGCGGG 5415 | | | || |||||||| || || ||||| ||||| || || || |||| Sbjct 634 TTCAGTA-GTTGCATGACCCTTCGCCCGCAGTTTACCTTTACCCACATGCCCACAGCA-- 690 Query 5416 GACAGTACAGACATTGC-----AAGGCGTAAAGTTTTGGGGCTAGAAAAACTGATTCGGG 5470 |||||| ||| || || || || ||||| || || ||||| || ||||| | Sbjct 691 ---AGTACAAACAGTGTTTTTTAAAGCATACAGTTTAGGAGCGAGAAAGACAGATTCAGA 747 Query 5471 CGCATAGGCGTCCGCGCCGCACTTTTCACACACCGTTTCGCATTCAACCAGCCAAGT--T 5528 | | || || | || ||||||||| || || |||||||||| ||| || | Sbjct 748 ACTAAAAGCATCAGACTTACATTTTTCACACTGAGTCTCACATTCAACCAACCATGTAAT 807 Query 5529 AGTTCGGGGTGGGAGGGGTCAAAAACCAGCCTCCCTCCGttttttttGATTCTTTTCCTA 5588 || | |||| || |||||||| ||| ||||||| ||||| || || | | || Sbjct 808 AGAT--GGGTTTTTTGGATCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTA 865 Query 5589 CCTTTTGTTTCCATGAGTTGGTGTCCCAAATCTGTCACGAAAAGGCTGTCAGTGTCTCCG 5648 ||| || |||||||| |||| ||| || ||||| || | |||||||||||| ||| Sbjct 866 CCTCTTTGCTCCATGAGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCG 925 Query 5649 TACACGGATTTCAGGGGTCGCTCAGAGAGAGGTGTGCCGCGATCCTCTTCGTAGAGAAAC 5708 || || ||||| | | | | | || || | || | || || |||| | ||| Sbjct 926 TAGACAGATTTTATAGTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAAT 985 Query 5709 TCTGACCATTCTGAGACGAAAGCACGAGTCCAAGCCAACACAAAGGATGCGATCTGAGAA 5768 |||| ||| || || || || | | |||||| ||||| ||||| || || || || ||| Sbjct 986 TCTGCCCACTCAGACACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAA 1045 Query 5769 GGATAGCGGTCGTTGTCAATTAGGGGGTCGGTATTTTCCAACGTGTGAAGACACAGGTCT 5828 | || | || ||| || |||| || | | ||||| || ||||| | || | ||| Sbjct 1046 GCGTACCTGTTGTTTTCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCA 1105 Query 5829 GTTTCTTCCGCATCCaaaaaaaTGATTGGTTTGTAAGTGTATGTCACGTGGCTTTGGGGG 5888 ||||| | || ||||| ||||||| || || | ||||||||||| || | Sbjct 1106 TCATCTTCAGTTTCTAAAAACGTGATTGGCTTATACTTATATGTCACGTGACTAT----- 1160 Query 5889 TCCTGCGGTGGGCTATAAAAGGGGGGATTCCACCGTTCCTCGTCACTTTCTTCCGGTTCG 5948 | |||| ||||||| ||| | | |||| || |||||||| || ||| Sbjct 1161 -----CTTTGGG-TATAAAAAGGGTGTGCTCTTCGTTT-TCATCACTTTCATCTAACTCG 1213 Query 5949 CTGTCCACGAGCGCTAGCTCTTTGGGTGAGTAAACACGTTGGAAAGAAGGCAACACTTCC 6008 || || || | |||| || | || || |||| | ||| Sbjct 1214 G----CAGAAGGTGCAGGT----GGGTAAGCTACGACA----AATTCTGGCATAATTTCA 1261 Query 6009 GCGCTGAGGTTGTCAGTTTCTATAAAAGAGGAGGATTTGATATTAATGTGCCCACTTGCT 6068 || || | ||||||||||||||| || || || |||||||| || || || || || Sbjct 1262 GCACTAAAGTTGTCAGTTTCTATGAATGATGAAGATTTGATGGAAAAGTTACCTCTGGCG 1321 Query 6069 ATCCCTTTTAAGGTTTTATCGTCAAGTTGGTCAGAAAAAACAGtttttttATTGTCCAGT 6128 || |||| | | | | || |||||||| ||||| ||| ||||||| ||||||| | Sbjct 1322 ATGGTTTTTGACGCGCTGGCTTCTAGTTGGTCTGAAAACACAATTTTTTTGTTGTCCAAT 1381 Query 6129 TTGGTAGCGAAGGAGCCGTATAGGGCGTTGGAAAGCAGTTTTGCAATGGATCTCAGCGTT 6188 || || || ||| ||| |||| |||||||||||| || || || ||| || || ||| Sbjct 1382 TTAGTGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTT 1441 Query 6189 TGATTTTTGTCTTTGTCGGCTTTTTCTTTGGCGGCGATGTTGAGCTGCACATATTCCCTG 6248 || || || |||||||| |||||||||||||| ||||||| |||||||| ||||| || Sbjct 1442 TGGTTCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTATTCTTTG 1501 Query 6249 GCTACGCATTTCCACTGAGGAAAAACGGTAGTGCGTTCATCTGGAATCAACCGCACTTTC 6308 || ||||| ||||||| || || | ||| || | ||| ||||||| | |||||| | Sbjct 1502 GCCACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCC 1561 Query 6309 CAGCCTCGGTTGTGCAAGGTGACCATGTCGATACTGGTAGCCACTTCCCCTCGCAAACGT 6368 || |||| ||||||||| || | || ||| ||| ||||| ||||| ||||||||| | Sbjct 1562 CATCCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGC 1621 Query 6369 TCATTTGTCCAGCAGAGGCGcccccccTTTCGTGAGCAAAAAGGGGGCAGGATGTCTAGC 6428 || || |||||||| || | || || |||| |||||||| || ||||| || || Sbjct 1622 TCGTTAGTCCAGCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGA 1681 Query 6429 AAGTTTTCGTCgggggggTCCGCGTCTATTGTAAAAATGCCGGGCAAAAGCAAGCGGTCA 6488 || ||||| || || |||||||| || || |||||||| || | ||| | |||| Sbjct 1682 AACAACTCGTCTGGAGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGACACTCGTCA 1741 Query 6489 AAGTAG--GATATTTTGGAAGAGCTGTTTAGAGCGTCCTG--CCAGTTTTTGGCCGCTAG 6544 || ||| || ||||| | | ||| ||| | ||| ||| | | | || |||| Sbjct 1742 AAATAGTCAATTTTTTGCTCTAAGT-TTTCAAGCTTTCTGATCCATTCTGTCGCAGCTAA 1800 Query 6545 GGCTCTTTCGAACGGGTTAAGGGGAGGACCCCAAGGCATGGGATGAGTAAGAGCAGATGC 6604 ||||||||| |||| || | || | || | || | ||||| || |||||| || Sbjct 1801 GGCTCTTTCATACGGATTTAAAGGCTGCCCGCTGGGAAAAGGATGCGTTAGAGCACTGGC 1860 Query 6605 GTACATTCCACAGATGTCATACACATACA---GGGGTTCGGTGAGTACTCCGAGATAGGT 6661 ||||| || ||||||||||||||||| | | |||| || | || | ||| || Sbjct 1861 ATACATGCCGCAGATGTCATACACATAAATTGGCTGTTCCATG---ATGCCAATATAAGT 1917 Query 6662 GGGATAGCATCTTCCTCCCCGGATGCTGCTTCGCACGTAATCGTACAGTTCGTGGGAGGG 6721 ||||||||| | || || |||||||| || ||||| || |||| ||| || || || Sbjct 1918 GGGATAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGG 1977 Query 6722 AGCAAGGAA---GTTAGGCCCCAAGTTTGTTTTCTGTGGTCGCTGGGCGGTGTAGAGAAT 6778 || | || ||| | ||||||| ||| | ||| | | |||| | || Sbjct 1978 TGCTAATAAAACGTT---GTCTAAGTTTGCTTTATTTGGCCTAACTTCTCTGTATAATAT 2034 Query 6779 TTGGCGAAATATTGCGTGAGAATTAGAAGAGATGGTGGGACGTTGGAAGA----CATTGA 6834 ||| ||| ||||| ||||| ||||| || ||||| | ||| || | | ||| Sbjct 2035 TTGCTTAAAAATTGCATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATGTTAAATGA 2094 Query 6835 AGCAGCTGTTGCTGTAA--CCAACGGTTTCGCGGATGAACTGTGCGTAGGAAGAAAAAAG 6892 |||| | | |||| || | || || || | | ||| || || Sbjct 2095 AGCATCAG-----GTAAGTTCACTTGAGAAGC-AATAAAGTTTTTGTAAGATTCTTGGAG 2148 Query 6893 TTTGTCAACAAGCGCGGCTGTGACGATGACGTCCAGCGCGCAATATTCTAAGGTTTCTTC 6952 ||||| || || || | ||| || | ||||| || | ||||| | | |||| | Sbjct 2149 TTTGTTTACTAGGGCCGATGTCACTAACACGTCTTGCACACAATAGTGCAGCGTTTGCTG 2208 Query 6953 GATGAGGTTGTAATGCGGTTTGTTTTTTGTTTTCCACAGTTCGCGGTTGAGGAGGTACTC 7012 ||| | || |||| | ||||||| | ||||||| | |||||| | ||||| Sbjct 2209 GATTATGTCGTAAGCCCCCACGTTTTTTTCTCTCCACAGAGCCTTGTTGAGTTGATACTC 2268 Query 7013 GGCTTCGTCTTTCCAGTAATTTCGGAGCGGAAACCCGTCAGCGGTTGCTTGGTAAGAACC 7072 | | ||||||||| || || ||||| || || | | ||||||||| || Sbjct 2269 TTCGCTGGATTTCCAGTATCTTAGGCTTGGAAAGCCATCCTCATCTTGTTGGTAAGACCC 2328 Query 7073 CAGCATGTAAAACTCATTGACTGCTCTGTAGGGACAGCATCCTTTTTCCACTGGAAGGGC 7132 | | || || ||||| |||||| ||| ||||||| ||||||||| || || || | Sbjct 2329 TATTCTATAGAATTCATTTACTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCTC 2388 Query 7133 GTACGCTTGAGCTGCCTTTCTTAAAGATGTGTGAGTTAATTGAAAGGTGTCTCTAACCAT 7192 ||| || ||| || |||||||| ||||| || | ||| |||||||| ||||| Sbjct 2389 GTAAGCCCCAGCAGCATTTCTTAAGCTAGTGTGGGTCAGCGCAAAAGTGTCTCTTACCAT 2448 Query 7193 GACTTTCAAAAATTGGTTTTTAAAATCTGAGTC-GTCACAGTTTCCTTGTTCCCA--CAG 7249 | ||| | ||| |||| || || | | | || | ||||| ||||| | | Sbjct 2449 AAATTTAACAAACTGGTACTTGTGGTCCGCGGCTGTGA-GCTTTCCACACTCCCAATCGG 2507 Query 7250 CGTAAAATCTTTTCGTTGTTTGTATTTTGGGTTGGGCAGAGATAAGGTAACGTCGTTAAA 7309 || ||||||||||||| || ||| ||||| || || | | || | || ||| || || Sbjct 2508 CG--AAATCTTTTCGTTTTTCGTACTTTGGATTAGGTAAGCAAAAAGAAATGTCATTGAA 2565 Query 7310 AAGGATTTTTCCTGCCCGAGGGATAAAATTTCGAGAGATTTTGAATGGAGCCGGCACGTC 7369 || ||||| || | || |||||||||| | |||||||| | || | | || || Sbjct 2566 CAGTATTTTACCGTTTCTTGGCATAAAATTTCTATTTATTTTGAAAGCAGGCAGAACATC 2625 Query 7370 GGTGCGGTTGTCAATGACTTGCGCGGCCAATACTATTTCGTCAAAACCATTGATGTTGTG 7429 || | ||||| ||||||||||||||||| || || || |||||||| ||||||||| Sbjct 2626 CGTTCTGTTGTGTATGACTTGCGCGGCCAACACGATCTCATCAAAACCGCAGATGTTGTG 2685 Query 7430 ACCGACGATATACAACTCTAAAAACTGGGG 7459 || | | ||| | || | |||||| || Sbjct 2686 GCCAATTACATAAATTTCAATAAACTGTGG 2715 Score = 194 bits (214), Expect = 3e-45 Identities = 392/578 (68%), Gaps = 4/578 (1%) Strand=Plus/Plus Query 8602 AAACACCACTGGTCCGGTTACTTTGAACCTGAAAGAGAGTTCGACAGAGTCAATGTCTGC 8661 ||| |||||||| ||||| ||| ||||||||||||| | ||| | ||||||||||||||| Sbjct 3723 AAATACCACTGGGCCGGTCACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGC 3782 Query 8662 ATCATTGATGGCGGCCTGGCGAAGAATTTCGTGAACATCGCCGGAGTTGTCCTGGAAAGC 8721 ||||| | || | || | ||| || || || ||| ||| || || |||| Sbjct 3783 GTCATTAACTGCCACTTGCTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGC 3842 Query 8722 AATTTCGGTCATAAGTTGATCAATTTCTTCCTCTTGGAGCTCGCCCCGTCCTGCTCGTTC 8781 ||||| | ||||| || ||||| ||||||| | | ||| || | ||||||| || Sbjct 3843 TATTTCTGCCATAAACTGCTCAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTC 3902 Query 8782 TACCGTCGCAGCCAAGTCGTTAGAAATGCGTCCTATGAGCTGCGAAAAAGCGCCGAGACC 8841 || || ||||||||||| | |||||| |||| | |||||| || Sbjct 3903 AACTGTGGCAGCCAAGTCAATGCTAATGCGAGACATGATGTTACTAAAAGCCTGTTCCCC 3962 Query 8842 GTTTTCGTTCCACACGCGGCTGTAGACTACGGCCCCGTCGTCGTCGCGGGCCCGCATGAC 8901 ||||| |||||||| | |||||| || | || || |||| | ||| | ||| || Sbjct 3963 ATTTTCATTCCACACTCTGCTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTAC 4022 Query 8902 TACCTGCGCCAGATTGAGTTCGACGTGTCGACTGAAAACCGGATAGTT--CCTCAGACGT 8959 ||||||||||||||| || || | || | |||| ||| || | ||| | | Sbjct 4023 TACCTGCGCCAGATTAAGCATCACATATC-TCCCAAAAGGGGA-AGATACCCTAATTTGG 4080 Query 8960 TGAAAAAGATAGTTAAGGGTGGTGGCAATGTGCTCGGTAACAAAGAAATACATGATCCAT 9019 ||| | ||||| || ||||| |||||||| || | ||||| || |||| | ||| Sbjct 4081 TGATTTAAGTAGTTTAGTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAG 4140 Query 9020 CTGCGTAAGGTGGACTCGTTAATGTCGCCCACGGCTTCCAGGCGCTCCATGGCTTCGTAA 9079 | | | || | || |||||||| || | || |||| |||| || | || ||| Sbjct 4141 CGTTGGAGAGTTGTTTCATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAA 4200 Query 9080 AAGTCAATGGCAAAATTGAAGAACTGGGAGTTTCGAGCAGATACTGTGAGTTCTTCTTCC 9139 || | | ||||| || || ||||| ||||| |||||| || ||||| |||||||| Sbjct 4201 AAATTTACAGCAAAGTTAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTCT 4260 Query 9140 AAGAGGCGAATAAGGTCGGCCACGGTGGCTCTCACTTC 9177 || | |||||| || ||||| | || || ||||| Sbjct 4261 AATAAGCGAATGGTTTCTGCCACAGCGGTCCTAACTTC 4298 >seq1393656 Length=1543 Score = 194 bits (214), Expect = 3e-45 Identities = 392/578 (68%), Gaps = 4/578 (1%) Strand=Plus/Plus Query 8602 AAACACCACTGGTCCGGTTACTTTGAACCTGAAAGAGAGTTCGACAGAGTCAATGTCTGC 8661 ||| |||||||| ||||| ||| ||||||||||||| | ||| | ||||||||||||||| Sbjct 31 AAATACCACTGGGCCGGTCACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGC 90 Query 8662 ATCATTGATGGCGGCCTGGCGAAGAATTTCGTGAACATCGCCGGAGTTGTCCTGGAAAGC 8721 ||||| | || | || | ||| || || || ||| ||| || || |||| Sbjct 91 GTCATTAACTGCCACTTGCTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGC 150 Query 8722 AATTTCGGTCATAAGTTGATCAATTTCTTCCTCTTGGAGCTCGCCCCGTCCTGCTCGTTC 8781 ||||| | ||||| || ||||| ||||||| | | ||| || | ||||||| || Sbjct 151 TATTTCTGCCATAAACTGCTCAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTC 210 Query 8782 TACCGTCGCAGCCAAGTCGTTAGAAATGCGTCCTATGAGCTGCGAAAAAGCGCCGAGACC 8841 || || ||||||||||| | |||||| |||| | |||||| || Sbjct 211 AACTGTGGCAGCCAAGTCAATGCTAATGCGAGACATGATGTTACTAAAAGCCTGTTCCCC 270 Query 8842 GTTTTCGTTCCACACGCGGCTGTAGACTACGGCCCCGTCGTCGTCGCGGGCCCGCATGAC 8901 ||||| |||||||| | |||||| || | || || |||| | ||| | ||| || Sbjct 271 ATTTTCATTCCACACTCTGCTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTAC 330 Query 8902 TACCTGCGCCAGATTGAGTTCGACGTGTCGACTGAAAACCGGATAGTT--CCTCAGACGT 8959 ||||||||||||||| || || | || | |||| ||| || | ||| | | Sbjct 331 TACCTGCGCCAGATTAAGCATCACATATC-TCCCAAAAGGGGA-AGATACCCTAATTTGG 388 Query 8960 TGAAAAAGATAGTTAAGGGTGGTGGCAATGTGCTCGGTAACAAAGAAATACATGATCCAT 9019 ||| | ||||| || ||||| |||||||| || | ||||| || |||| | ||| Sbjct 389 TGATTTAAGTAGTTTAGTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAG 448 Query 9020 CTGCGTAAGGTGGACTCGTTAATGTCGCCCACGGCTTCCAGGCGCTCCATGGCTTCGTAA 9079 | | | || | || |||||||| || | || |||| |||| || | || ||| Sbjct 449 CGTTGGAGAGTTGTTTCATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAA 508 Query 9080 AAGTCAATGGCAAAATTGAAGAACTGGGAGTTTCGAGCAGATACTGTGAGTTCTTCTTCC 9139 || | | ||||| || || ||||| ||||| |||||| || ||||| |||||||| Sbjct 509 AAATTTACAGCAAAGTTAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTCT 568 Query 9140 AAGAGGCGAATAAGGTCGGCCACGGTGGCTCTCACTTC 9177 || | |||||| || ||||| | || || ||||| Sbjct 569 AATAAGCGAATGGTTTCTGCCACAGCGGTCCTAACTTC 606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 92463640870590