Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_028107.1 Length=34064 Score E Sequences producing significant alignments: (Bits) Value seq416950 520 2e-143 seq1393656 167 4e-37 >seq416950 Length=5269 Score = 520 bits (576), Expect = 2e-143 Identities = 1598/2435 (66%), Gaps = 76/2435 (3%) Strand=Plus/Plus Query 4685 ATCCCACAGTTCGGTAACGTGTTCTATGGCA-TCTCGATCCAGCAGACTTCTTGGTTGCG 4743 |||||||||||| | || ||||| | |||| | || ||||| || || || | ||| | Sbjct 339 ATCCCACAGTTCTTTTACATGTTCCACGGCAGTGTC-ATCCAACATACATCGTTGTTTCT 397 Query 4744 AGGGTTGGGACGACTTTCGCTGTAGGGCACCAGCCGGTGGGCGTCCAGGGCTGCGAGAGT 4803 ||||| || | ||||| ||| |||| ||| |||||| |||| | | || | || || Sbjct 398 TGGGTTTGGTTGCTTTTCGA-GTAAGGCATCAGGCGGTGGCCGTCTATGTCTACAAGGGT 456 Query 4804 CATGTCCTTCCAGGGTCTGAGGGTCCGCGTCAGGGTGGTCTCGGTGACGGTAAAAGGGTG 4863 | |||| ||||| || || | || ||||| | || || |||||||| || || ||| Sbjct 457 CTTGTCTTTCCAAGGCCTCACTGTGCGCGTTAAAGTTGTTTCGGTGACTGTGAACGGG-- 514 Query 4864 GGCCCC--TGGTTGGGCGCTT-GCCAGTGTGCGTTTGAGGCTCATCCTGCTGGTGCTGAA 4920 ||| | || || || | | || || || ||||| | |||| | ||||||| || Sbjct 515 -GCCGCGTTGCTTTGGTTCGTAGCGAGGGTCCGTTTTAAACTCAGGCGGCTGGTGTGAAA 573 Query 4921 GTGGACGTTTTCGCCCTGGGAATCGGCCAAGTAGCACTTAAGCATGAGGTCGTAGCTGAG 4980 | | | | | ||| | || | ||||||||| ||| || ||| || | | Sbjct 574 GCGCTGGCTCCCCTGCTGCGCGTCAGACAAGTAGCATTTAGCCAAAGTGTCATAACATA- 632 Query 4981 AGATTCAGCCG---CGTGTCCTTTGGCGCGCAGCTTCCCCTTAGAAACATGCAGACACTT 5037 |||||| | | || || || || ||||| || || ||| |||||| ||| Sbjct 633 --ATTCAGTAGTTGCATGACCCTTCGCCCGCAGTTTACCTTTACCCACATGCCCACAGCA 690 Query 5038 GCTACAGTGCAGAGACTTG-AGCGCATAGAGCTTAGGGGCTaaaaaaaCTGATTCAGGGG 5096 |||| ||| | || | ||||| || ||||| || | ||| || ||||||| Sbjct 691 AGTACAAA-CAGTGTTTTTTAAAGCATACAGTTTAGGAGCGAGAAAGACAGATTCAGAAC 749 Query 5097 AAAAGGCATCTGCGCCACACTGAGCGCATACAGTCTCACACTCTACCAGCCAGGTAA--G 5154 ||| ||||| | ||| | | || ||||||||| || |||| ||| |||| | Sbjct 750 TAAAAGCATCAGACTTACATTTTTCACACTGAGTCTCACATTCAACCAACCATGTAATAG 809 Query 5155 CTCGGGTTGGTTTGGGTCAAAAACCAACTTGCCTCCAttttttttAATTCGCTTCTTACC 5214 | || || ||||| |||||||| | ||| ||||||||||| ||||| || | ||||| Sbjct 810 ATGGGTTT--TTTGGATCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACC 867 Query 5215 TCGGGTTTCCATGAGTCTGTGTCCTGCTTCGGTCACAAAAAGACTGTCGGTGTCCCCGTA 5274 || |||||||| | ||| || ||||||||||||| | ||||| ||||||||||| Sbjct 868 TCTTTGCTCCATGAGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTA 927 Query 5275 GACCGATTTGAGCTCTCTGTGTTCCAGAGGAGTGCCGCGGTCCTCGTCGTACAAAAACTG 5334 ||| ||||| | | | || | || || | || | ||| ||| |||| ||||| | Sbjct 928 GACAGATTTTATAGTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTC 987 Query 5335 AGACCACTCTGAGACGAAAGCTCTGGTCCACGCTAATACAAATGAAGCTATCTGCGAGGG 5394 | |||||| || || || |||| ||||| || || ||||| ||||| || || || | Sbjct 988 TGCCCACTCAGACACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGC 1047 Query 5395 GTATCTGTCATTTTCAATGAGAGGGTCAACCTTTTGTAAGGTGTGGAGACAGAGGTCGTC 5454 ||| |||| ||||| || | ||| |||| ||| ||||| | || | ||| || Sbjct 1048 GTACCTGTTGTTTTCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATC 1107 Query 5455 CTCTTCCGCGTCCATAAAGGTGATTGGCTTATAGGTGTAAGTCACGTGACCATCGGGGTG 5514 ||||| | || | ||| |||||||||||||| | || |||||||||| ||| Sbjct 1108 ATCTTCAGTTTCTAAAAACGTGATTGGCTTATACTTATATGTCACGTGACTATC------ 1161 Query 5515 GCATGGTGGGCTAT-AAAAGGGGGCGTTACCCGCTTCGTCGTCACTTTCTTCCGCATCGC 5573 | || ||| ||||||| | | | || || || |||||||| || ||| Sbjct 1162 -----TTTGGGTATAAAAAGGGTGTGCTCTTCGTTT--TCATCACTTTCATCTAACTCG- 1213 Query 5574 TGTGGATCAGAGCCAGTTGTTCTGGTAAGTAAGCCCTTTCGAAGGCGGGCATGACCTCGG 5633 |||| || || | ||| |||||| | || | ||||| | || | Sbjct 1214 ------GCAGA---AG--GTGCAGGTGGGTAAGCTACGACAAATTCTGGCATAATTTCAG 1262 Query 5634 CGCTCAAGGTGTCAGTTTCTACAAACGAGGTGGATTTGATATTCACGCGGCCGGAGGCAA 5693 | || ||| |||||||||||| || || | |||||||| | | || ||| | Sbjct 1263 CACTAAAGTTGTCAGTTTCTATGAATGATGAAGATTTGATGGAAAAGTTACCTCTGGCGA 1322 Query 5694 T-GTCCTTGACGGTGGAGGTTTCCATTTGGTCAGAAAAAACAATCTTTTTATTGTCAAGT 5752 | || ||||| | | || ||| | |||||| ||||| ||||| ||||| ||||| | | Sbjct 1323 TGGTTTTTGAC-GCGCTGGCTTCTAGTTGGTCTGAAAACACAATTTTTTTGTTGTCCAAT 1381 Query 5753 TTCGTGGCAAACGACCCGTAGAGGGCGTTAGATAGCAATTTGGCAATGGAACGTAAAGTT 5812 || |||||||| || || | |||||| || || | || || ||| || | ||| Sbjct 1382 TTAGTGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTT 1441 Query 5813 TGAtttttttCGCGGTCGGCCCGCTCCTTGGCCGCGATGTTAAGTTGTACGTACTCCCGG 5872 || || ||||| ||| || || ||||| ||||||| || || ||||| || | Sbjct 1442 TGGTTCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTATTCTTTG 1501 Query 5873 GCCACGCAGCGCCACTCCGGGAAAACAGTAGTGCGCTCGTCGGGCACTATACGGACGCTC 5932 |||||||| |||||| ||||| | || || | ||||| || | || || || | Sbjct 1502 GCCACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCC 1561 Query 5933 CAGCCCCTGTTGTGCAGGGTAATAAGGTCCACACTGGTGGCTACCTCACCCCTGAGCGGT 5992 || || |||||||||| ||||| | ||| | | || ||||| || || | | || Sbjct 1562 CATCCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGC 1621 Query 5993 TCGTTGGTCCAGCACAACCTACCGCCTTTTCGGGAGCAAAACGGGGGAAGTACGTCTAG- 6051 ||||| |||||||||| ||| |||||||||| |||||||||||| || ||| | || || Sbjct 1622 TCGTTAGTCCAGCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGA 1681 Query 6052 --CAAGTTGGAAGCCGGTGGGTCGGCGTCGATGGTGAAGATGCCGGGGAGGAGAGACTTG 6109 ||| | | | || || || |||||||||||||| ||||| || || ||| ||| | Sbjct 1682 AACAACTCG---TCTGGAGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGACACTCG 1738 Query 6110 TTAAAATAATTAA---TTTCCACGCGGTGTTGCAAG-GCCAAGTCCCACTTTTTGACGGC 6165 | |||||| | || ||| | | || || |||| | ||| | | | | || Sbjct 1739 TCAAAATAGTCAATTTTTTGCTCTAAGT-TTTCAAGCTTTCTGATCCATTCTGTCGCAGC 1797 Query 6166 CAGAGCCCTCTCGTACGGATTAAGGGGAGGACCCCAGGGCATGGGGTGAGTAAGGGCAGA 6225 | || || || |||||||| | || | || | ||| | || || || || ||| Sbjct 1798 TAAGGCTCTTTCATACGGATTTAAAGGCTGCCCGCTGGGAAAAGGATGCGTTAGAGCACT 1857 Query 6226 AGCGTACATGCCGCAAATGTCGTACACATAAAGAGGCTGGCGTAGAACGCCGATGTAAGT 6285 || ||||||||||| ||||| |||||||||| ||||| | | ||| || ||||| Sbjct 1858 GGCATACATGCCGCAGATGTCATACACATAAATTGGCTGTTCCATGATGCCAATATAAGT 1917 Query 6286 AGGATAGCAGCGCCCGCCCCGAATGCTGGCCCTGACGTAATCGTACATCTCATGGGACGG 6345 ||||||||||| || || || ||||| | |||||| || ||||| ||||| || || Sbjct 1918 GGGATAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGG 1977 Query 6346 GGCCAAGAGGCCGCTCCCCAGGTGGGTTTTTTGGGGTTTCACGGCGCGGTAGGCGATCTG 6405 || || | || | | | || | ||| | || | || | | ||| || || Sbjct 1978 TGCTAATAAAACGTTGTCTAAGTTTGCTTTATTTGGCCTAACTTCTCTGTATAATATTTG 2037 Query 6406 TCGGAAGATGGCGTGGGAGTTGGAAGAGATGGTAGGCCGCTGAAACACGTTAAAGCTGGC 6465 || || || || ||||| || || || || | ||||| | |||||| || Sbjct 2038 CTTAAAAATTGCATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATGTTAAATGAAGC 2097 Query 6466 CTGCGAAAGGCCCACGGCGTCCTGC-AGAAACTGTGCGTATGACTCCTTGAGTTTGTCCA 6524 | | | | ||| | || | ||| | | ||| || || | |||||||| | Sbjct 2098 ATCAGGTAAGTTCAC-TTGAGAAGCAATAAAGTTTTTGTAAGATTCTTGGAGTTTGTTTA 2156 Query 6525 CCAGCGCAGCGGTTACGAGGACGTCCAAGGCGCAGTAGTCCAGGGTTTCGCGAACCAGGT 6584 | || || | || || | ||||| | || |||| ||| |||| | | | || Sbjct 2157 CTAGGGCCGATGTCACTAACACGTCTTGCACACAATAGTGCAGCGTTTGCTGGATTATGT 2216 Query 6585 CGTAGGTTTTTTC--TTGCTTCTTTTCCCAGAGTTCGCGGTTGAGGAGGTACTCATCGCG 6642 |||| | | || |||| | | ||||| | |||||| | ||||| |||| Sbjct 2217 CGTAAGCCCCCACGTTTTTTTCTCTCCACAGAG--CCTTGTTGAGTTGATACTCTTCGCT 2274 Query 6643 GTCTTTCCAGTAGTCTTCGGC-GGGAAATCCTCGGTCATCTGCTCGGTAAGCGCCCAACA 6701 | ||||||||| |||| ||| ||||| || |||||| | |||||| || | Sbjct 2275 GGATTTCCAGTA-TCTTAGGCTTGGAAAGCCATCCTCATCTTGTTGGTAAGACCCTATTC 2333 Query 6702 TGTAAAACTCGTTAACCGCTTTGTAAGGACAACAGCCTTTTTCTATGGACAGAGCATAGG 6761 | || || || || || |||| ||| ||||| | |||||||||| | ||| | || | Sbjct 2334 TATAGAATTCATTTACTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCTCGTAAG 2393 Query 6762 CCTGGGCCGCCTTGC-GAAGAGAGGTGTGGGTGAGCTGGAAGGTGTCTCTTACCATGACT 6820 || || || || | ||| | |||||||| ||| || |||||||||||||| | | Sbjct 2394 CCCCAGCAGCATTTCTTAAGCTA-GTGTGGGTCAGCGCAAAAGTGTCTCTTACCATAAAT 2452 Query 6821 TTCAAATACTGATGCTTGAAGTCGGTGTCGTCGCAACAGCCCTGCTCCCACAGGGTGAAA 6880 || | | |||| | |||| ||| | | | | || |||||| || |||| Sbjct 2453 TTAACAAACTGGTACTTGTGGTCCGCGGCTGTGAGCTTTCCACACTCCCAATCGGCGAAA 2512 Query 6881 TCTGTGCGCTTTTTCTGCCGAGGATTGGGCAGAGC-AAAGGTGACATCGTTAAATAAGAT 6939 ||| | || |||| | | ||||| || | ||| ||| | | || || || | || Sbjct 2513 TCTTTTCGTTTTTCGTACTTTGGATTAGGTA-AGCAAAAAGAAATGTCATTGAACAGTAT 2571 Query 6940 TTTACCGGCGCGAGGCATGAAGTTTCTGGAAATGCGGAAAGGCCCGG--GAACGTCGGAG 6997 ||||||| | ||||| || ||||| || ||||| | || |||| || | Sbjct 2572 TTTACCGTTTCTTGGCATAAAATTTCTATTTATTTTGAAAG--CAGGCAGAACATCCGTT 2629 Query 6998 CGATTGTTGATAACCTGCGCGGCCAGAACAATCTCGTCAAAGCCGTTGATGTTATGCCCG 7057 | |||| || || |||||||||| || ||||| ||||| ||| |||||| || || Sbjct 2630 CTGTTGTGTATGACTTGCGCGGCCAACACGATCTCATCAAAACCGCAGATGTTGTGGCCA 2689 Query 7058 ACGATGTAAAGTTCCAGAAAGCGTGGAACGCCTTT 7092 | | |||| ||| | ||| ||||| |||||| Sbjct 2690 ATTACATAAATTTCAATAAACTGTGGACTGCCTTT 2724 Score = 167 bits (184), Expect = 4e-37 Identities = 348/520 (67%), Gaps = 14/520 (3%) Strand=Plus/Plus Query 8238 TCTGAACCTGAAAGAGAGTTCCACAGAATCAATGTCTGTATCGTTAACGGCCGCCTGTCG 8297 ||||||||||||||| | ||||| ||| |||||||||| || ||||| ||| | || Sbjct 3744 TCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTT 3803 Query 8298 CAGAATTTCCTGAACGTCGCCCGAGTTGTCCTGGTAGGCGATCTCGGCCATAAACTGCTC 8357 | ||| || ||||| || ||| || || || || || || |||||||||||||| Sbjct 3804 TAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTC 3863 Query 8358 GATCTCTTCTTCTTGGAGGTCGCCGTGTCCGGCCCTCTCCACGGTGGCGGCCAGGTCGTT 8417 |||||||| | | | || || || || ||||| || ||||| |||| ||| | Sbjct 3864 AATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAAT 3923 Query 8418 GGAGATGCGTCGCATGAGTTGAGAGAACGCGTTTAGGCCGTTTTCGTTCCACACGCGGCT 8477 | ||||| ||||| | | || || | | || ||||| |||||||| | ||| Sbjct 3924 GCTAATGCGAGACATGATGTTACTAAAAGCCTGTTCCCCATTTTCATTCCACACTCTGCT 3983 Query 8478 GTACACCACTCCCCCAGCGGAGTCTCGGGCCCGCATAACGACCTGAGCGACGTTCAATTC 8537 |||||| | | ||| | || || ||| | ||| || ||||| || | || | Sbjct 3984 GTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCAT 4043 Query 8538 TACGTGTC-------GGGCGAAGACGACGTAGTTTCTCAGGCGCTGAAAGAGGTAGTTGA 8590 || | || || ||||| | || ||| | ||| | |||||| | Sbjct 4044 CACATATCTCCCAAAAGGGGAAGATACCCTAATTT-------GGTGATTTAAGTAGTTTA 4096 Query 8591 GGGTGGTGGCGATGTGCTCGCACACAAAGAAATACATGATCCAGCGGCGCAGGGTGGATT 8650 | ||||| || ||||| || |||||| || |||| | |||||| | || || | || Sbjct 4097 GTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTT 4156 Query 8651 CGTTGATGTCTCCGATGGCCTCGAGACGCTCCATGGCCTCATAAAAATCCACGGCAAAGT 8710 | || ||||| || | ||||| | ||||| || |||||||||||| || ||||||| Sbjct 4157 CATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGT 4216 Query 8711 TAAAAAACTGGGAGTTGCGGGCGGATACTGTGAGTTCCTC 8750 |||||||||| ||| | || || || ||||| || || Sbjct 4217 TAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTC 4256 >seq1393656 Length=1543 Score = 167 bits (184), Expect = 4e-37 Identities = 348/520 (67%), Gaps = 14/520 (3%) Strand=Plus/Plus Query 8238 TCTGAACCTGAAAGAGAGTTCCACAGAATCAATGTCTGTATCGTTAACGGCCGCCTGTCG 8297 ||||||||||||||| | ||||| ||| |||||||||| || ||||| ||| | || Sbjct 52 TCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTT 111 Query 8298 CAGAATTTCCTGAACGTCGCCCGAGTTGTCCTGGTAGGCGATCTCGGCCATAAACTGCTC 8357 | ||| || ||||| || ||| || || || || || || |||||||||||||| Sbjct 112 TAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTC 171 Query 8358 GATCTCTTCTTCTTGGAGGTCGCCGTGTCCGGCCCTCTCCACGGTGGCGGCCAGGTCGTT 8417 |||||||| | | | || || || || ||||| || ||||| |||| ||| | Sbjct 172 AATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAAT 231 Query 8418 GGAGATGCGTCGCATGAGTTGAGAGAACGCGTTTAGGCCGTTTTCGTTCCACACGCGGCT 8477 | ||||| ||||| | | || || | | || ||||| |||||||| | ||| Sbjct 232 GCTAATGCGAGACATGATGTTACTAAAAGCCTGTTCCCCATTTTCATTCCACACTCTGCT 291 Query 8478 GTACACCACTCCCCCAGCGGAGTCTCGGGCCCGCATAACGACCTGAGCGACGTTCAATTC 8537 |||||| | | ||| | || || ||| | ||| || ||||| || | || | Sbjct 292 GTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCAT 351 Query 8538 TACGTGTC-------GGGCGAAGACGACGTAGTTTCTCAGGCGCTGAAAGAGGTAGTTGA 8590 || | || || ||||| | || ||| | ||| | |||||| | Sbjct 352 CACATATCTCCCAAAAGGGGAAGATACCCTAATTT-------GGTGATTTAAGTAGTTTA 404 Query 8591 GGGTGGTGGCGATGTGCTCGCACACAAAGAAATACATGATCCAGCGGCGCAGGGTGGATT 8650 | ||||| || ||||| || |||||| || |||| | |||||| | || || | || Sbjct 405 GTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTT 464 Query 8651 CGTTGATGTCTCCGATGGCCTCGAGACGCTCCATGGCCTCATAAAAATCCACGGCAAAGT 8710 | || ||||| || | ||||| | ||||| || |||||||||||| || ||||||| Sbjct 465 CATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGT 524 Query 8711 TAAAAAACTGGGAGTTGCGGGCGGATACTGTGAGTTCCTC 8750 |||||||||| ||| | || || || ||||| || || Sbjct 525 TAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTC 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95625295409340