Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_028113.1 Length=35685 Score E Sequences producing significant alignments: (Bits) Value seq416950 286 7e-73 seq1393656 176 9e-40 >seq416950 Length=5269 Score = 286 bits (316), Expect = 7e-73 Identities = 780/1192 (65%), Gaps = 40/1192 (3%) Strand=Plus/Plus Query 5482 GGGTCAAAAACCAGGCGGCCGCCGTGTTTTTTGATGCGATGCTTACCTCGGCTCTCCATG 5541 || |||||||| || || || | ||| || ||||| || ||||||| ||||||| Sbjct 821 GGATCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCCATG 880 Query 5542 AGGCGGTGTCCGGCTTCGGTGACGAAGAGGCTGTCGGTGTCGCCGTAGACGGACTTGAGG 5601 || ||||| || ||||||| || || | |||||| ||||| |||||||| || || | Sbjct 881 AGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTTATA 940 Query 5602 GGTCGCTGCTCGAGCGGCGTGCCGCGGTCCTCCGCGTAGAGAAACTCGGACCACTCTGAG 5661 | | || | || ||| | || | ||| || ||||| | ||| || | |||||| || Sbjct 941 GTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCAGAC 1000 Query 5662 ACGAAGGCGCGAGTCCAGGCCAGGACGAAGGAGGCCACGTGGGAGGGGTAGCGGTCGTTG 5721 || || | | ||||||||||| || || || || | |||||| | ||| | || ||| Sbjct 1001 ACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTGTTT 1060 Query 5722 TCCACCAGGGGGTCCGTTTTTTCGACGGTGTGCAGGCAGAGGTCCCCGTCCTCCGCATCC 5781 || | | || | ||||| | ||||| | ||| | ||| | || || | || Sbjct 1061 TCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTTTCT 1120 Query 5782 AAAAAGGTGATTGGCTTGTAGGTGTAAGTCACGTGACCTTCCTTTgggggcggggggCGA 5841 ||||| ||||||||||| || | || |||||||||| || |||||| | Sbjct 1121 AAAAACGTGATTGGCTTATACTTATATGTCACGTGACTATC-TTTGGGT----------A 1169 Query 5842 TAAAAGGGGNCNNNNNNNNNNNNNNNNTCACTGTCCTCTGCGTCGCTGTGGACGATCGCC 5901 ||||| ||| ||||| || ||| ||| | || Sbjct 1170 TAAAAAGGGT-GTGCTCTTCGTTTTCATCACTTTCATCTAACTCG-----GCAGA----- 1218 Query 5902 AGCTGCTCGGGTGAGTAGAGGCGCT-CGAAGGCGGGCATGACGTCGGCGCTGAGGGTGTC 5960 || ||| |||| ||| || | | || | ||||| | || || || | | |||| Sbjct 1219 AGGTGCA--GGTGGGTA-AGCTACGACAAATTCTGGCATAATTTCAGCACTAAAGTTGTC 1275 Query 5961 AGTTTCTACAAACGAGGAGGATTTGATGTTAACCTGCCCGGAGGCGATGCCTTTGAGAAG 6020 |||||||| || || || ||||||||| || | || ||||||| ||| || | Sbjct 1276 AGTTTCTATGAATGATGAAGATTTGATGGAAAAGTTACCTCTGGCGATGGTTTTT-GACG 1334 Query 6021 GGCGGGGT-CGAGCTGGTCGGCAAAAACAAtttttttATTGTCCAGCTTAGTGGCAAAGG 6079 || || | | || ||||| | ||| ||||||||||| ||||||| |||||||||||| Sbjct 1335 CGCTGGCTTCTAGTTGGTCTGAAAACACAATTTTTTTGTTGTCCAATTTAGTGGCAAAGC 1394 Query 6080 ACCCGTAGAGGGCGTTGGAGAGCAGCTTGGCGATGGAACGCAGGGTCTGGTTTTTGTCGC 6139 || || | ||||||||| || ||||| || ||| |||| ||| ||||| || || Sbjct 1395 TGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTTTGGTTCTTTTCTT 1454 Query 6140 GGTCGGCGCGCTCCTTGGCGGCAATGTTGAGCTGCACGTACTCGCGCGCCAGGCAGCGCC 6199 ||| || || ||||| | ||||| ||||||||||| || |||| ||| || Sbjct 1455 TGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTATTCTTTGGCCACGCACTTCC 1514 Query 6200 ACTGCGGAAAGACGGTGGTGCGCTCGTCGGGGAGCAGACGCACGCGCCAGCCGCGGTTGT 6259 ||| || |||| ||| || | ||||| || || | ||||| ||| || | ||||| Sbjct 1515 ACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCATCCTCTGTTGT 1574 Query 6260 GCAGCGTCACCAGGTCGACGCTGGTGGCGACCTCGCCGCGCAAGCGCTCGTTGGTCCAGC 6319 ||| || | || ||| | || || || || || ||||| ||||||| ||||||| Sbjct 1575 GCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCGTTAGTCCAGC 1634 Query 6320 AGAGGCGGCCGCCTTTGCGTGAACAAAAGGGGGGTAACACGTCCAGTTGGTCCTCGGGCG 6379 | || | |||||||| | || ||||| || || | | || || |||| | Sbjct 1635 ACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGAAACAACTCGTCTG 1694 Query 6380 GGGGGTCGGCGTCGATGGTGAAGACGCCGGGAAGCAAGTGGGAGTCAAAGTAGTCAATGG 6439 | || || |||||||||||||| | ||| ||||| | |||||| |||||||| Sbjct 1695 GAGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGACACTCGTCAAAATAGTCAAT-- 1752 Query 6440 GAACGGATGGCT----GGTTGAGGGCGCGCTG--CCAGTTTTGGGCGGCCCAGGCCCGTT 6493 | ||| | || || ||| ||| | | || || |||| | || Sbjct 1753 ----TTTTTGCTCTAAGTTTTCAAGCTTTCTGATCCATTCTGTCGCAGCTAAGGCTCTTT 1808 Query 6494 CCAAGGGATTCAGCGGAGGGCCCCAGGGCATGGGGTGGGTGAGGGCAGAGGCGTACATGC 6553 | | ||||| | || | || | ||| | || || || || ||| ||| ||||||| Sbjct 1809 CATACGGATTTAAAGGCTGCCCGCTGGGAAAAGGATGCGTTAGAGCACTGGCATACATGC 1868 Query 6554 CGCAGATGTCGTAAACGTAGAGGGGCTCCTCGAGAACTCCGATGTAGGTGGGGTAGCAGC 6613 |||||||||| || || || | |||| || | | || || || ||||| ||||||| Sbjct 1869 CGCAGATGTCATACACATAAATTGGCTGTTCCATGATGCCAATATAAGTGGGATAGCAGC 1928 Query 6614 GCCCTCCGCGAATACTGGCGCGCACGTAATCGTACATCTCGTGCGAGGGGGC 6665 | || || || || || ||| ||||| || ||||| || || || || || Sbjct 1929 GACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGGTGC 1980 Score = 176 bits (194), Expect = 9e-40 Identities = 394/586 (67%), Gaps = 8/586 (1%) Strand=Plus/Plus Query 8556 CGGTTGAGGTCCTGGATCTGCCTCCTCTGCGTCAAGACCACGGGTCCCGTGAGCTTGAAC 8615 ||||||| || ||| |||| || | | || ||||| || || || | ||||| Sbjct 3691 CGGTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGTCACTCTGAAC 3750 Query 8616 CTGAAAGAGAGTTCGACAGAGTCAACCTCGGCGTCGTTCATGGCGGCCTGGCGCAGGATC 8675 |||||||| | ||| | |||||||| || ||||| || | || | || | ||| Sbjct 3751 CTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAATC 3810 Query 8676 TCCTGGACGTCTCCCGAGTTGTCTTGGTAGGCGATCTCGGCCATAAACTGCTCAACTTCC 8735 || |||||||| ||| || || || || || || |||||||||||||||| || Sbjct 3811 TCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCAATCTCT 3870 Query 8736 TCCTCCTGGAGCTCGCCGCGGCCGGCTCGCTCGACGGTGGCGGCCAGGTCGTTGGAAATG 8795 |||| || | ||| || | || |||| ||| || ||||| |||| ||| || |||| Sbjct 3871 TCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATGCTAATG 3930 Query 8796 CGATTCATGA-GCTGGGAAAA-CGCGTTCAGCCCGGTTTCGTTCCAGACTCGGCTGTAGA 8853 ||| ||||| | | |||| | |||| ||| |||| ||||| |||| |||||| | Sbjct 3931 CGAGACATGATGTTACTAAAAGCCTGTTC--CCCATTTTCATTCCACACTCTGCTGTACA 3988 Query 8854 CCACGTCGCCCTCGGCGTCGCGCGCGCGCATAACGACCTGCGCCAGGTTGAGCTCGACGT 8913 | | | || || ||| | || | ||| || ||||||||||| || ||| || | Sbjct 3989 CAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCATCACAT 4048 Query 8914 GCCGCGCGAAGACGGCGTAGTTGCGC--AGGCGCTGGAAGAGGTAGTTGAGCGTGGTGGC 8971 | | | | | || | || | | | | | || | |||||| || ||||| || Sbjct 4049 ATCTCCC--AAAAGGGGAAGATACCCTAATTTGGTGATTTAAGTAGTTTAGTGTGGTAGC 4106 Query 8972 CACGTGCTCGCAGACGAAGAAGTACATGATCCAGCGCCGGAGCGTGAGCTCGTTGACGTC 9031 | ||| || || || ||| |||| | |||||| |||| || || || | ||| Sbjct 4107 AATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTAATGTC 4166 Query 9032 GCCGAGCGCCTCCAACCGTTCCATGGCCTCGTAAAAGTCTACCGCAAAGTTAAAAAACTG 9091 || ||||||||||| || | || |||| ||||| | ||| ||||||||||||||||| Sbjct 4167 ACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAAAACTG 4226 Query 9092 CGAGTTGCGCGCCGACACCGTCAGCTCCTCCTCGAGGAGGCGGATG 9137 | ||| | || ||||| || ||||| || || | | ||| ||| Sbjct 4227 CTGGTTTCTAGCAGACACAGTGAGCTCTTCTTCTAATAAGCGAATG 4272 >seq1393656 Length=1543 Score = 176 bits (194), Expect = 9e-40 Identities = 374/553 (68%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 8589 AAGACCACGGGTCCCGTGAGCTTGAACCTGAAAGAGAGTTCGACAGAGTCAACCTCGGCG 8648 || ||||| || || || | ||||||||||||| | ||| | |||||||| || ||| Sbjct 32 AATACCACTGGGCCGGTCACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCG 91 Query 8649 TCGTTCATGGCGGCCTGGCGCAGGATCTCCTGGACGTCTCCCGAGTTGTCTTGGTAGGCG 8708 || || | || | || | ||||| |||||||| ||| || || || || Sbjct 92 TCATTAACTGCCACTTGCTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCT 151 Query 8709 ATCTCGGCCATAAACTGCTCAACTTCCTCCTCCTGGAGCTCGCCGCGGCCGGCTCGCTCG 8768 || || |||||||||||||||| || |||| || | ||| || | || |||| ||| Sbjct 152 ATTTCTGCCATAAACTGCTCAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCA 211 Query 8769 ACGGTGGCGGCCAGGTCGTTGGAAATGCGATTCATGA-GCTGGGAAAA-CGCGTTCAGCC 8826 || ||||| |||| ||| || ||||||| ||||| | | |||| | |||| || Sbjct 212 ACTGTGGCAGCCAAGTCAATGCTAATGCGAGACATGATGTTACTAAAAGCCTGTTC--CC 269 Query 8827 CGGTTTCGTTCCAGACTCGGCTGTAGACCACGTCGCCCTCGGCGTCGCGCGCGCGCATAA 8886 | |||| ||||| |||| |||||| || | | || || ||| | || | ||| | Sbjct 270 CATTTTCATTCCACACTCTGCTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTA 329 Query 8887 CGACCTGCGCCAGGTTGAGCTCGACGTGCCGCGCGAAGACGGCGTAGTTGCGC--AGGCG 8944 | ||||||||||| || ||| || | | | | | | || | || | | | | | Sbjct 330 CTACCTGCGCCAGATTAAGCATCACATATCTCCC--AAAAGGGGAAGATACCCTAATTTG 387 Query 8945 CTGGAAGAGGTAGTTGAGCGTGGTGGCCACGTGCTCGCAGACGAAGAAGTACATGATCCA 9004 || | |||||| || ||||| || | ||| || || || ||| |||| | ||| Sbjct 388 GTGATTTAAGTAGTTTAGTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCA 447 Query 9005 GCGCCGGAGCGTGAGCTCGTTGACGTCGCCGAGCGCCTCCAACCGTTCCATGGCCTCGTA 9064 ||| |||| || || || | ||| || ||||||||||| || | || |||| || Sbjct 448 GCGTTGGAGAGTTGTTTCATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATA 507 Query 9065 AAAGTCTACCGCAAAGTTAAAAAACTGCGAGTTGCGCGCCGACACCGTCAGCTCCTCCTC 9124 ||| | ||| |||||||||||||||||| ||| | || ||||| || ||||| || || Sbjct 508 AAAATTTACAGCAAAGTTAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTC 567 Query 9125 GAGGAGGCGGATG 9137 | | ||| ||| Sbjct 568 TAATAAGCGAATG 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100180888304730