Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq17409 105 2e-18 >seq17409 Length=41676 Score = 105 bits (116), Expect = 2e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 32328 CCCATATTCCGCCTGTTCGGCTACGCCGGAACTGGCAAGACCACGCTGGCCCGGCACATC 32387 ||| | ||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| || Sbjct 35771 CCCGTGTTCCGGCTGTTCGGCTATGCCGGCACCGGCAAGACCACCCTGGCGCGGCATATT 35830 Query 32388 GCCGAGGGCATCGACGGCACCGTTCTCTTCGCCGCCCCGACCGGGAAGGCCGCCTACGTC 32447 || |||||| || |||||||||| | ||| ||| ||||| |||||||| || Sbjct 35831 GCGGAGGGCGTCAACGGCACCGTGAAATACGCGGCCTTCACCGGCAAGGCCGCGCTGGTG 35890 Query 32448 CTGAAGACGAAGGGCTGCCCGAACACCGGCACCATCCACCAGCTGATCTAC 32498 || | ||||| ||| ||| || |||||| || |||||||||| Sbjct 35891 ATGCGCAACAAGGGTTGCGACAACGCCTCCACCATTCATTCGCTGATCTAC 35941 Score = 93.3 bits (102), Expect = 1e-14 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 33288 GACGAGTTCGACTACGGCTACGCCCTGACCGTGCACAAGAGCCAGGGCTCCCAGTGGGAC 33347 |||||||||||||||||||| | |||||||||||||| ||||||||| |||||| || Sbjct 36629 GACGAGTTCGACTACGGCTATGTGCTGACCGTGCACAAATCCCAGGGCTCGCAGTGGAAC 36688 Query 33348 GACGTGCTCGTCATCGACGAGTG------GTTCCGGAACGATCGCCAGCAGTGGCTCTAT 33401 ||||| | | ||||||| | |||| | || ||| || |||||||| Sbjct 36689 GACGTCGTGCTGTTCGACGAAAGCTTCGCCTTCCAGGACAGCCGCGCGCGCTGGCTCTAC 36748 Query 33402 ACCGCGCTGACCCGCGCCGCGAA 33424 |||| | |||||||||||||| Sbjct 36749 ACCGGCATCACCCGCGCCGCGAA 36771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168171917865600