Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq3094 136 1e-27 >seq3094 Length=68251 Score = 136 bits (150), Expect = 1e-27 Identities = 220/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 39009 GATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39068 |||||| | |||| || | |||||| ||| || || |||||||| ||||| || Sbjct 58408 GATCTGGCCCACCTGCTCGCGGCCGTAGCGCTCTTGCACATAGCGGATCACCTCGCCGCG 58349 Query 39069 GCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAA 39128 ||| | | |||||||||||| | ||| ||||| ||||| || || ||||| || || Sbjct 58348 GCGGTCCTGACAGAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTTCGGGGTTGAGAAA 58289 Query 39129 CCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGC 39188 |||||||| | || ||| |||| || || || |||||||| || ||||| || Sbjct 58288 GCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGATCGGTGATGGTCAGCGCGTAGGC 58229 Query 39189 GGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGC 39248 |||||||||| || | || ||||| || || || ||| | ||| | | |||||| Sbjct 58228 AACCAGCGAGCCTGCGCCCGAACCGCGGCCCGGTCCCACCGGAATGCCATGCGACTTCGC 58169 Query 39249 CCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGA-ACCCCATCTGGTTGATCA 39307 ||| ||||||||| | |||| |||||||| | ||||| | ||| | |||| | Sbjct 58168 CCACTTGATGAAGTCCGACACGATCAGGAAGTA-GCCGGGATATTTCATGCGCGTGATGA 58110 Query 39308 TGTCGATCTCGTAC 39321 |||||| ||| || Sbjct 58109 CGTCGATTTCGAAC 58096 Score = 105 bits (116), Expect = 2e-18 Identities = 227/334 (68%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 37930 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGT 37989 ||||| ||| |||| |||| || |||| ||||| ||| || || || | | | ||| Sbjct 59442 GCCGCGATGAACTCCACCGGATAATGCGCCTTCATGTAGGCGGTCTGGAACGACACGAGC 59383 Query 37990 CCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCC 38049 |||| || || | ||| |||||||||| |||| | ||||| |||||| || Sbjct 59382 GCGTAAGCGGCGGCGTGGCTCTTGTTGAAGCCGTAGTCCGCGAACTTGGCGAGCAGTTCG 59323 Query 38050 CACACCGCCCGGATGGCAGCC--TCCGAGTAGCCTCGCTC--GCTCGCCCCCTTCTGGAA 38105 | | || | | | | ||| | || | | | | | || | |||| || ||| Sbjct 59322 AAGATCGTCTGC--GCCTGCCCTTTCG-GCA-CGTTGTTCTTGGTCGCGCCGGCGACGAA 59267 Query 38106 GTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAG 38165 | || || || |||| ||| || || | ||||||||||||| ||||| || || || Sbjct 59266 GATCTCGCGCTGCTTGTCCATTTCCGCGCGGATCTTCTTGCCCATCGCGCGGCGCAGCAG 59207 Query 38166 GTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTG 38225 |||||| | ||||| | || ||||||| || |||||| || | |||||| ||||| Sbjct 59206 GTCGGCGTCGCCGAGCGAATAGCCGGCCATGACCTGCGCGATCTGCATCACCTGTTCCTG 59147 Query 38226 GTAGATGATGAGCCCGAAGGTCGGGTCCAGGATC 38259 |||||||||| ||||||||| | ||||||| Sbjct 59146 ATAGATGATGACGCCGAAGGTCTCCTTCAGGATC 59113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140267857496490