Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq17409 98.7 3e-16 >seq17409 Length=41676 Score = 98.7 bits (108), Expect = 3e-16 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 32113 GAGGAGTTCGACTATGGCTATGCGCTCACCGTCCACAAGTCGCAGGGCTCCCAGTGGAAC 32172 || ||||||||||| ||||||| ||| ||||| ||||| || |||||||| ||||||||| Sbjct 36629 GACGAGTTCGACTACGGCTATGTGCTGACCGTGCACAAATCCCAGGGCTCGCAGTGGAAC 36688 Query 32173 AACGTCCTGCTGTTTGACGAGTGGTACG---GGAAGGA---CCGGAAGGAATGGTTGTAC 32226 ||||| ||||||| ||||| | | || |||| ||| | ||| | ||| Sbjct 36689 GACGTCGTGCTGTTCGACGAAAGCTTCGCCTTCCAGGACAGCCGCGCGCGCTGGCTCTAC 36748 Query 32227 ACCGCCATTACCCGGGCCGCGGAACG 32252 |||| ||| ||||| |||||| |||| Sbjct 36749 ACCGGCATCACCCGCGCCGCGAAACG 36774 Score = 93.3 bits (102), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 31146 GCCCGTGTTCCAGCTCGCCGGGTACGCCGGAACCGGCAAGACCACCCTGGCCAAACACCT 31205 ||||||||||| ||| ||| || ||||| |||||||||||||||||||| || | Sbjct 35770 GCCCGTGTTCCGGCTGTTCGGCTATGCCGGCACCGGCAAGACCACCCTGGCGCGGCATAT 35829 Query 31206 CGCCGCGACCGTCAACGGTCCCGTGTACTTCGCCGCCTACACCGGCAAGGCCGC 31259 || | | ||||||||| ||||| | | ||| |||| ||||||||||||||| Sbjct 35830 TGCGGAGGGCGTCAACGGCACCGTGAAATACGCGGCCTTCACCGGCAAGGCCGC 35883 Score = 80.6 bits (88), Expect = 9e-11 Identities = 158/233 (68%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 31496 AGGCCGCGCTGCTCGTGGTGGATGAGTATTCCATGATTGACGAGCAGATGGGGGAGGACT 31555 ||||| |||| ||||| | || || | || ||| | |||| | | | || ||| Sbjct 36006 AGGCCAAGCTGATCGTGATCGACGAATGCTCGATGGTCGACGCGGAACTCGGCCGCGACC 36065 Query 31556 TGCTCAGCTTCGGTTGCCCGATCCTCGCCCTGGGCGATCCGGGGCAGCTCCCGCCCGT-- 31613 || | |||| |||||| | || | ||||||||||||| |||| | ||||| | Sbjct 36066 TGATGTCGTTCGATTGCCCCTTGCTGGTGCTGGGCGATCCGGCGCAGTTGCCGCCGATCC 36125 Query 31614 -GGGCGGCACCCCCTTCTTCAAGAACAAGCCCGACATCCTGCTCACGGAGATTCACCGCC 31672 ||||||| | ||| | | | |||| || ||||||| || | ||||| | Sbjct 36126 AGGGCGGCGGCTTTTTCACCGATGCCGAGCCGGATGCGATGCTCACCGAAGTGCACCGTC 36185 Query 31673 AGGCCCAGGACAACCCGATCATCTGGATGTCCAAGGAGGTCCGCGAGGGCCGC 31725 |||| |||||| |||| ||| | ||||||| | || ||| |||||||||||| Sbjct 36186 AGGCGCAGGACGACCCCATCGTGCGGATGTCGATGGCGGTGCGCGAGGGCCGC 36238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174644176001370