Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_029898.1 Length=37545 Score E Sequences producing significant alignments: (Bits) Value seq416950 179 8e-41 seq1393656 131 4e-26 >seq416950 Length=5269 Score = 179 bits (198), Expect = 8e-41 Identities = 474/723 (66%), Gaps = 11/723 (2%) Strand=Plus/Plus Query 6022 AATTCGGGTAGAATTTCCGCGCTAAAGTTGTCTACTTCTATGTACGAGGAAGATTTGACC 6081 ||||| || | |||||| || ||||||||||| ||||||| | || |||||||||| Sbjct 1244 AATTCTGGCATAATTTCAGCACTAAAGTTGTCAGTTTCTATGAATGATGAAGATTTGATG 1303 Query 6082 GTGTATTCACCGGTGGCGAT-GCCTTTGAGGTACTTGTCTTCCATCTGGTCGGCGAAGAC 6140 | | | ||| ||||||| | ||||| | | || |||| | ||||| | || || Sbjct 1304 GAAAAGTTACCTCTGGCGATGGTTTTTGACGCGC-TGGCTTCTAGTTGGTCTGAAAACAC 1362 Query 6141 GGTGGTCTTGTTGTCCAGCTTGGTGGCGAAGGAGCCGTAGAGGGCATTGGAGAGGAGCTT 6200 | | |||||||||| || ||||| ||| ||| || | ||| ||||| || ||||| Sbjct 1363 AATTTTTTTGTTGTCCAATTTAGTGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAGCTT 1422 Query 6201 GGCAATGCTGCGGATGGTCTGGTTCTTGTCCCGGTCCGCCTGTTCCTTGGCGCGGATGTT 6260 || ||||| || ||||| |||||||| || ||| || | ||| ||||| | |||||| Sbjct 1423 AGCTATGCTTCGCATGGTTTGGTTCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGATGTT 1482 Query 6261 GAGCTGGACATACTCGCGGGCCACGCAGCGCCACTCGGGGAACACGGTGGTGCGCTNNNN 6320 ||||| || || || ||||||||| |||||| ||||| | ||| || | | Sbjct 1483 TAGCTGCACGTATTCTTTGGCCACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTCGTC 1542 Query 6321 NNNNNNNNNNNNNNNNNNCCAGCCGCGATTATGCAGGGTGATGACGTCGATGGAGGTGAC 6380 ||| || | || |||| || || | ||| || || || | Sbjct 1543 TGGAAGAATGCGCACTGCCCATCCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGTAGC 1602 Query 6381 AATCTCTCCACGCAGGCGCTCGTTGGTCCAAGCCAGACGCCCACCTTTGCGAGAGCAGAA 6440 | ||||| |||| ||||||| ||||| ||| | || ||||| | ||||| || Sbjct 1603 TACTTCTCCTCGCAAAGGCTCGTTAGTCCAGCACAGCCTTCCGCCTTTTCTGGAGCAAAA 1662 Query 6441 AGGGGGGAGGACATCCAGGTAGTCTTCGGGGGGCGGGTCGGCATCGATGGTGAAGATGCC 6500 || || || |||| || | ||| || || || || ||||||||||| ||||| Sbjct 1663 CGGAGGCAGTTCATCAAGAAACAACTCGTCTGGAGGATCCGCGTCGATGGTGAAAATGCC 1722 Query 6501 GGGTAGGAGGGTGGTGTTAAAGTAGGAGA---TGGAGGCGGGGTCTTGCAAGC--GCTGC 6555 || || || || ||| ||| | | | || || ||||| ||| Sbjct 1723 TGGAAGAAGACACTCGTCAAAATAGTCAATTTTTTGCTCTAAGT-TTTCAAGCTTTCTGA 1781 Query 6556 TCCCAGGCG-CGCATGGCGAGGGCCCGATCGAAGGGGTGCAGGGGGCGCCCGGCGGGGAA 6614 ||| | |||| || | ||| | || | || | | || ||||| ||| || Sbjct 1782 TCCATTCTGTCGCA--GCTAAGGCTCTTTCATACGGATTTAAAGGCTGCCCGCTGGGAAA 1839 Query 6615 GGGGTGGGTGAGGGCGCTGGCATACATGCCACAGATGTCGTAGACGTAGATGGGTTCCTC 6674 || || || || || |||||||||||||| |||||||| || || || || || | || Sbjct 1840 AGGATGCGTTAGAGCACTGGCATACATGCCGCAGATGTCATACACATAAATTGGCTGTTC 1899 Query 6675 CAGGACCCCCAGGTAAGAGGGGTAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTC 6734 || || || | |||| ||| || ||||| || || |||||||| ||| |||||||| Sbjct 1900 CATGATGCCAATATAAGTGGGATAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTC 1959 Query 6735 GTA 6737 || Sbjct 1960 ATA 1962 Score = 143 bits (158), Expect = 6e-30 Identities = 528/829 (64%), Gaps = 18/829 (2%) Strand=Plus/Plus Query 5069 TCCCAGAGTTCGGTTACATGTCCCAGGGCAATTGGATCCAGCAGACCTCGCGATTTCTTG 5128 ||||| ||||| |||||||| ||| |||| | ||||| || || ||| ||||||| Sbjct 340 TCCCACAGTTCTTTTACATGTTCCACGGCAGTGTCATCCAACATACATCGTTGTTTCTTG 399 Query 5129 GGTTGGGGGCGCTGTTGCTGTAGGGGACCAGGCGATGGTGGTC---GTCGAGCAGGTTCA 5185 |||| || ||| || ||| || | |||||| ||| ||| ||| | ||| || Sbjct 400 GGTTTGGTT-GCTTTTCGAGTAAGGCATCAGGCGGTGGCCGTCTATGTCTACAAGGGTCT 458 Query 5186 TGGTCTGATCCTTCCAGGGGCGCAGGGTCCTCTTCAGGGTGGTCTCCGTCACGGTGAAGG 5245 || || ||||| || | || || | | | | || || || || || ||||| | Sbjct 459 TG------TCTTTCCAAGGCCTCACTGTGCGCGTTAAAGTTGTTTCGGTGACTGTGAACG 512 Query 5246 GTTGCACGTGACTTTGCGCGCTTGCGAGGGTGCGCTTGAGACTCATCCGGCTGGTGCTGA 5305 | | ||| ||||| | |||||||| || || | ||||| ||||||||| | Sbjct 513 GGGCCGCGTTGCTTTGGTTCGTAGCGAGGGTCCGTTTTAAACTCAGGCGGCTGGTGTGAA 572 Query 5306 AGCGGTCGCTTCCCTGCTGAGCATCGGCATAGTAGCAAGATTTGAGC---AG-GTCGTAG 5361 |||| | ||| |||||||| || || | ||||||| || ||| || ||| || Sbjct 573 AGCGCTGGCTCCCCTGCTGCGCGTCAGACAAGTAGCA----TTTAGCCAAAGTGTCATAA 628 Query 5362 GAGAGGGTGGTGGTGGCGTGGCCCTTGGCGCGCAGCTTGCCCTTGCCCACCTTCTTGCAA 5421 | | || || || || ||||| || ||||| || || || ||||| | | || Sbjct 629 CATAATTCAGTAGTTGCATGACCCTTCGCCCGCAGTTTACCTTTACCCACATGCCCACAG 688 Query 5422 ACGGTACAGCAGGTATCCTTGAGGGCATAGAGCTTGGGGGCGAGGAAGACGGACTNNNNN 5481 ||||| || | || | ||||| || || || ||||| ||||| || | Sbjct 689 CAAGTACAAACAGTGTTTTTTAAAGCATACAGTTTAGGAGCGAGAAAGACAGATTCAGAA 748 Query 5482 NNNNNNNNNNNNNCCCCACAGAAGGAGCATTGGGTCTCGCACTCGACGAGCCAGGTGAGG 5541 | ||| || || ||||| || || || | ||| || | Sbjct 749 CTAAAAGCATCAGACTTACATTTTTCACACTGAGTCTCACATTCAACCAACCATGTAATA 808 Query 5542 TCGGGGTGGTCGGGGTCAAAGACCAGGCGACCGCCAttttttttGATGCGGTGCTTACCT 5601 |||| | || ||||| || || || |||||||| || |||||||| |||||| Sbjct 809 GATGGGTTTTTTGGATCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCT 868 Query 5602 TGCGTCTCCATGAGGTAGCGTCCGCGCTCGGTGACGAAGAGGCTGTCGGTGTCTCCGTAG 5661 ||||||||| | | || ||||| || || | |||||| ||||| |||||| Sbjct 869 CTTTGCTCCATGAGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAG 928 Query 5662 ACAGATTTGAGGGCGCGCTGGGCGAGTGGCACGCCGCGGTCCTCCTCGTACAAGAATCCG 5721 |||||||| | | || |||||| || | ||| || |||| || ||| | Sbjct 929 ACAGATTTTATAGTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCT 988 Query 5722 GCCCACTCTGAGACGAAGGCCCGCGTCCAGGCCAAGACAAAGGAGGCGATCTGCGAGGGG 5781 |||||||| || || || | | ||||||||||| ||||| || || || || || | | Sbjct 989 GCCCACTCAGACACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCG 1048 Query 5782 TAGCGGTCATTGGTGATGAGGGGCGAGTTTTTCTCGAGGGTATGCAAGCAGTAGTCCCCG 5841 || | || || || | || ||||| || || | || || ||||| ||| | Sbjct 1049 TACCTGTTGTTTTCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCA 1108 Query 5842 TCCTCGACATCCAGGAAGGTGATTGGCTTGTAGGTGTAGGTCACGTGAC 5890 || || || | || ||||||||||| || | || |||||||||| Sbjct 1109 TCTTCAGTTTCTAAAAACGTGATTGGCTTATACTTATATGTCACGTGAC 1157 Score = 136 bits (150), Expect = 8e-28 Identities = 395/602 (66%), Gaps = 6/602 (1%) Strand=Plus/Plus Query 8498 GCGGTTGATGTTCTGGATCTCGCGCTTCTGGGAGAAGACCACCGGGCCGATGACGCGGAA 8557 ||||||||||||||| ||||| ||| ||| || ||||| |||||| | || | ||| Sbjct 3690 GCGGTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGTCACTCTGAA 3749 Query 8558 CCTGAAAGAGATTTCCACAGAATCAATCTGGGCATCGTTCATGGCGACCTGGCGCAGGAT 8617 ||||||||| ||||||| ||| ||||| | || || || | || || || | || Sbjct 3750 CCTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAAT 3809 Query 8618 CTC-CTCGACGTCGCCCGAGTTGTCGTGGAAGGCGATGTCTTGCATGAAGCGCTCGGCCT 8676 ||| ||| ||||| || ||| ||||| | || || ||| ||| || |||| || Sbjct 3810 CTCACTC-ACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCAATCT 3868 Query 8677 CGTCCTCGTCGAGCTCGCCTTGTCCGGCGCGCTCGACGGTGGCGGCGAGGTCGCGGCTGA 8736 | |||| || | ||| ||| || || | ||| || ||||| || | ||| ||| | Sbjct 3869 CTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATGCTAA 3928 Query 8737 TGCGGCGCATGAGCGCGGGGAAGGCCTGGGTGCCGTTCTCGTTCCAGACGCGGTTGTAGA 8796 |||| ||||| || ||||| || || || ||||| || | | |||| | Sbjct 3929 TGCGAGACATGATGTTACTAAAAGCCTGTTCCCCATTTTCATTCCACACTCTGCTGTACA 3988 Query 8797 TGTTGCGTCCTTCGGCGTCGCGGGCCCGCATGATGACCTGCGCGAAGGGGATG--TCGAG 8854 | |||| || ||| | ||| | ||| | |||||||| || | | || | Sbjct 3989 CAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGC-CAGATTAAGCATC-AC 4046 Query 8855 GTGTCGAGCGAAGGGCGCGTAGAGGCGCAGGTTGTGATGCAAGTAGTTGAGGGTGGTGGC 8914 | || | || || | | | | | | ||||| |||||||| || ||||| || Sbjct 4047 ATATCTCCCAAAAGGGGAAGATACCCTAATTTGGTGATTTAAGTAGTTTAGTGTGGTAGC 4106 Query 8915 GATGTGCTCGGCGACGAAAAAGTACATGACCCAGCGGCGCAGGGTGAGTTCGTTGATGTC 8974 ||||| || || || |||||| |||| |||||||| | || || ||| || ||||| Sbjct 4107 AATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTAATGTC 4166 Query 8975 CCCGAGGGTCTCGAGTCGAAGCATGGCCTGGTAAAAGTCGATGGCGAAGTTGAAAAAGTG 9034 || || | ||| | || | || ||| ||||| | | || ||||| ||||| || Sbjct 4167 ACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAAAACTG 4226 Query 9035 GTGGTCGCGCGCGGCGACGGTGAGTTCCTCTTCCAAGAGTCGGATGGCGCCGGCCACGGC 9094 |||| | || | || ||||| || ||||| || | || |||| | ||||| || Sbjct 4227 CTGGTTTCTAGCAGACACAGTGAGCTCTTCTTCTAATAAGCGAATGGTTTCTGCCACAGC 4286 Query 9095 GG 9096 || Sbjct 4287 GG 4288 Score = 96.9 bits (106), Expect = 7e-16 Identities = 255/385 (66%), Gaps = 16/385 (4%) Strand=Plus/Plus Query 9507 AAGGCTTCGAGCCACAGAGCA-TCACAAGGTAAGCTGAGTT--TGGTCTGTTGGTCTCGG 9563 || || || ||||| | |||| ||||||||||||||||||| || |||| | | || Sbjct 4633 AACGCATCTAGCCAAA-AGCAGTCACAAGGTAAGCTGAGTTCTTGTTCTGGGGCTAGAGG 4691 Query 9564 GAG----------AGGAGGTAGTTAAAGTAGGCGGTCTTGAGACGCCGGATGGCGGTGAG 9613 ||| || ||| |||||||||| || || || || | || | ||| || Sbjct 4692 GAGGTGTTTAGCCAGAAGGAAGTTAAAGTAAGCAGTTTTAAGTTTGCTAATAGTGGTCAG 4751 Query 9614 GACGACGAGGTCCTTGCGACCGGCTCGCTGGATGCGGATGCGGTCGGCCATCCCCCAGGC 9673 | || | ||| ||||| || || |||| | |||||||| || | |||||| || Sbjct 4752 AATAACCAAGTCTTTGCGGCCCGCGTTTTGGACCCTTATGCGGTCAGCTAGCCCCCAAGC 4811 Query 9674 GCGCTCCTGACA-GCGTCCCATGTCGCGGTTCTGCTCTTGCAACATCTGCTCGACGGGCA 9732 ||||| || || ||| || ||||| ||||||||||||| | ||| || |||| Sbjct 4812 ACGCTCTTGGCATGCG-CCTATGTCTTTAGATTGCTCTTGCAACAAGTACTCTACTGGCA 4870 Query 9733 CGTTTTGGTCGGCATCCATGGAGGTGCGTCCGTAGCCTCGCAGGGGCCGGAGGAGGGCGA 9792 ||| ||||| || || | | || || || |||| |||| |||| || ||||| | Sbjct 4871 CGTCATGGTCAGCGTCTAAGTTAGTCCGCCCAAAGCCACGCATCGGCCTGATTAGGGCCA 4930 Query 9793 GGTCGGCGACGACGCGCTCGGCCAGGATGGCCTGCTGCACCTGCGCGAGCGTCTCCTCGA 9852 | || || || | | ||| || | || || ||||| | | ||| || || | Sbjct 4931 GATCTGCCACAATCCTCTCTGCTAAAATAGCTTGCTGGATAGATGTGAGTGTGTCTGAAA 4990 Query 9853 AGTTGTCGAGGTCGATGAAGCGGTG 9877 ||||||| | ||| || || | ||| Sbjct 4991 AGTTGTCCATGTCTATAAACCTGTG 5015 >seq1393656 Length=1543 Score = 131 bits (144), Expect = 4e-26 Identities = 392/599 (65%), Gaps = 6/599 (1%) Strand=Plus/Plus Query 8501 GTTGATGTTCTGGATCTCGCGCTTCTGGGAGAAGACCACCGGGCCGATGACGCGGAACCT 8560 |||||||||||| ||||| ||| ||| || ||||| |||||| | || | |||||| Sbjct 1 GTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGTCACTCTGAACCT 60 Query 8561 GAAAGAGATTTCCACAGAATCAATCTGGGCATCGTTCATGGCGACCTGGCGCAGGATCTC 8620 |||||| ||||||| ||| ||||| | || || || | || || || | ||||| Sbjct 61 GAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAATCTC 120 Query 8621 -CTCGACGTCGCCCGAGTTGTCGTGGAAGGCGATGTCTTGCATGAAGCGCTCGGCCTCGT 8679 ||| ||||| || ||| ||||| | || || ||| ||| || |||| ||| | Sbjct 121 ACTC-ACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCAATCTCTT 179 Query 8680 CCTCGTCGAGCTCGCCTTGTCCGGCGCGCTCGACGGTGGCGGCGAGGTCGCGGCTGATGC 8739 ||| || | ||| ||| || || | ||| || ||||| || | ||| ||| |||| Sbjct 180 CCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATGCTAATGC 239 Query 8740 GGCGCATGAGCGCGGGGAAGGCCTGGGTGCCGTTCTCGTTCCAGACGCGGTTGTAGATGT 8799 | ||||| || ||||| || || || ||||| || | | |||| | Sbjct 240 GAGACATGATGTTACTAAAAGCCTGTTCCCCATTTTCATTCCACACTCTGCTGTACACAA 299 Query 8800 TGCGTCCTTCGGCGTCGCGGGCCCGCATGATGACCTGCGCGAAGGGGATG--TCGAGGTG 8857 | |||| || ||| | ||| | ||| | |||||||| || | | || | | Sbjct 300 TTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGC-CAGATTAAGCATC-ACATA 357 Query 8858 TCGAGCGAAGGGCGCGTAGAGGCGCAGGTTGTGATGCAAGTAGTTGAGGGTGGTGGCGAT 8917 || | || || | | | | | | ||||| |||||||| || ||||| || || Sbjct 358 TCTCCCAAAAGGGGAAGATACCCTAATTTGGTGATTTAAGTAGTTTAGTGTGGTAGCAAT 417 Query 8918 GTGCTCGGCGACGAAAAAGTACATGACCCAGCGGCGCAGGGTGAGTTCGTTGATGTCCCC 8977 ||| || || || |||||| |||| |||||||| | || || ||| || ||||| || Sbjct 418 GTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTAATGTCACC 477 Query 8978 GAGGGTCTCGAGTCGAAGCATGGCCTGGTAAAAGTCGATGGCGAAGTTGAAAAAGTGGTG 9037 || | ||| | || | || ||| ||||| | | || ||||| ||||| || || Sbjct 478 TAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAAAACTGCTG 537 Query 9038 GTCGCGCGCGGCGACGGTGAGTTCCTCTTCCAAGAGTCGGATGGCGCCGGCCACGGCGG 9096 || | || | || ||||| || ||||| || | || |||| | ||||| |||| Sbjct 538 GTTTCTAGCAGACACAGTGAGCTCTTCTTCTAATAAGCGAATGGTTTCTGCCACAGCGG 596 Score = 100 bits (110), Expect = 6e-17 Identities = 256/385 (66%), Gaps = 16/385 (4%) Strand=Plus/Plus Query 9507 AAGGCTTCGAGCCACAGAGCA-TCACAAGGTAAGCTGAGTT--TGGTCTGTTGGTCTCGG 9563 || || || ||||| | |||| ||||||||||||||||||| || |||| | | || Sbjct 941 AACGCATCTAGCCAAA-AGCAGTCACAAGGTAAGCTGAGTTCTTGTTCTGGGGCTAGAGG 999 Query 9564 GAG----------AGGAGGTAGTTAAAGTAGGCGGTCTTGAGACGCCGGATGGCGGTGAG 9613 ||| || ||| |||||||||| || || || || || || | ||| || Sbjct 1000 GAGGTGTTTAGCCAGAAGGAAGTTAAAGTAAGCAGTTTTAAGTTTGCGAATAGTGGTCAG 1059 Query 9614 GACGACGAGGTCCTTGCGACCGGCTCGCTGGATGCGGATGCGGTCGGCCATCCCCCAGGC 9673 | || | ||| ||||| || || |||| | |||||||| || | |||||| || Sbjct 1060 AATAACCAAGTCTTTGCGGCCCGCGTTTTGGACCCTTATGCGGTCAGCTAGCCCCCAAGC 1119 Query 9674 GCGCTCCTGACA-GCGTCCCATGTCGCGGTTCTGCTCTTGCAACATCTGCTCGACGGGCA 9732 ||||| || || ||| || ||||| ||||||||||||| | ||| || |||| Sbjct 1120 ACGCTCTTGGCATGCG-CCTATGTCTTTAGATTGCTCTTGCAACAAGTACTCTACTGGCA 1178 Query 9733 CGTTTTGGTCGGCATCCATGGAGGTGCGTCCGTAGCCTCGCAGGGGCCGGAGGAGGGCGA 9792 ||| ||||| || || | | || || || |||| |||| |||| || ||||| | Sbjct 1179 CGTCATGGTCAGCGTCTAAGTTAGTCCGCCCAAAGCCACGCATCGGCCTGATTAGGGCCA 1238 Query 9793 GGTCGGCGACGACGCGCTCGGCCAGGATGGCCTGCTGCACCTGCGCGAGCGTCTCCTCGA 9852 | || || || | | ||| || | || || ||||| | | ||| || || | Sbjct 1239 GATCTGCCACAATCCTCTCTGCTAAAATAGCTTGCTGGATAGATGTGAGTGTGTCTGAAA 1298 Query 9853 AGTTGTCGAGGTCGATGAAGCGGTG 9877 ||||||| | ||| || || | ||| Sbjct 1299 AGTTGTCCATGTCTATAAACCTGTG 1323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105408157142130