Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_030860.1 Length=29581 Score E Sequences producing significant alignments: (Bits) Value seq416950 778 0.0 seq1393656 174 3e-39 >seq416950 Length=5269 Score = 778 bits (862), Expect = 0.0 Identities = 1640/2417 (68%), Gaps = 63/2417 (3%) Strand=Plus/Plus Query 4399 TTTTTCCCAAAGTTCTTTTAGTTCTCCCACGGCAATTGGGTCCAACATACTTCGTTGTTT 4458 ||| ||||| |||||||||| | | |||||||| | |||||||||| ||||||||| Sbjct 336 TTTATCCCACAGTTCTTTTACATGTTCCACGGCAGTGTCATCCAACATACATCGTTGTTT 395 Query 4459 CTTGGGTTTGGGTTGCTGTTCGAGTAAGGGATCAAAATATTCTGGTTTAGCTGATGAAGT 4518 ||||||||||| ||||| ||||||||||| |||| | || || | ||| Sbjct 396 CTTGGGTTTGG-TTGCTTTTCGAGTAAGGCATCAGGCGGTGGCCGTCTATGTCTACAAGG 454 Query 4519 GTCTTGTCCTTCCATGGGCGCAGAGTTCTTGTTAAGGTTGATTGAGTTACTGTGAAAGGT 4578 |||||||| ||||| || | || || | ||||| |||| || || |||||||| || Sbjct 455 GTCTTGTCTTTCCAAGGCCTCACTGTGCGCGTTAAAGTTGTTTCGGTGACTGTGAACGGG 514 Query 4579 TGTACATTGTTCACTGTTGTAGTTAGGGTTCGTCGTAGACTCGTACGGGAAGTCTGAAAG 4638 | ||| | | |||| ||||| ||| || |||| ||| || |||||| Sbjct 515 GCCGCGTTGCTTTGGTTCGTAGCGAGGGTCCGTTTTAAACTCAGGCGGCTGGTGTGAAAG 574 Query 4639 ACTTCGCTGCCCTGTTGAACATCAGCATAATAACAAGCTAGCATAACA-TCATAAGATAG 4697 | ||| ||||| || | |||| | || || |||| || |||||| ||| Sbjct 575 CGCTGGCTCCCCTGCTGCGCGTCAGACAAGTAGCATT-TAGCCAAAGTGTCATAACATAA 633 Query 4698 ATC--TTGTTTAGCATGACCTTTTGCCCTTAATTTTCCAGGGCCTACATGTTTACAAAAA 4755 || | ||| |||||||| || |||| | ||| || || ||||| ||| || Sbjct 634 TTCAGTAGTT--GCATGACCCTTCGCCCGCAGTTTACCTTTACCCACATGCCCACAGCAA 691 Query 4756 TCACAAGTTGTATCTTTTAAAGCATATAATTTTGGCGCCATGAATAAGGATTCAGAACTA 4815 |||| || | |||||||||||| | ||| || || | || | |||||||||||| Sbjct 692 GTACAAACAGTGTTTTTTAAAGCATACAGTTTAGGAGCGAGAAAGACAGATTCAGAACTA 751 Query 4816 TAAGCATCTTGTCCACATTTGCTACATTGGGTTTCACATTCTACTAACCAAGTTAAATCA 4875 ||||||| |||||| ||| || || |||||||| || ||||| || | | Sbjct 752 AAAGCATCAGACTTACATTTTTCACACTGAGTCTCACATTCAACCAACCATGTAATAGAT 811 Query 4876 GGATTTTTTGGATCAAATGTTAAAGAGCCCCCAttttttttAATTCTGTGCTTACCTTTT 4935 || |||||||||||||| || || |||||||| ||||| | ||| |||||| || Sbjct 812 GGGTTTTTTGGATCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTT 871 Query 4936 TGTTCCATTAGGTCCTTGCCTAGTTTTGTCAGAAATAAACTGTCAGTATCTCCGTAGACA 4995 || ||||| || | || || |||| ||| || |||||||| || ||||||||| Sbjct 872 TGCTCCATGAGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACA 931 Query 4996 GATTTTAGTTTTCTGTGTTCTAAAGGAGTTCCTCGGTCATCAGCATATAAAAAATCTGCC 5055 ||||||| || | || | || || |||||| ||| || || |||||||| |||||| Sbjct 932 GATTTTATAGTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCC 991 Query 5056 CATTCTGAGATAAAAGCTCTTGTCCAAGCAAGTACAAAAGAAGCAATTTGAGAGGGGTAA 5115 || || || | ||| |||| ||||| || | ||||| |||||||| || || | ||| Sbjct 992 CACTCAGACACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTAC 1051 Query 5116 CGATCATTGGTTATAAGAGAGGAATTTAATTCTAAAGTGTGTAAACAGGCATCATCTTCA 5175 | | || ||| | || || || ||||||||||||||| || ||||| || Sbjct 1052 CTGTTGTTTTCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCT 1111 Query 5176 TCACAATCTAAGAATGTGATTGGTTTATAAACATAAGTCACGTG-CT-CCTGGGGAGTAT 5233 ||| ||||| || |||||||| ||||| ||| |||||||| || || || |||| Sbjct 1112 TCAGTTTCTAAAAACGTGATTGGCTTATACTTATATGTCACGTGACTATCTTTGG-GTAT 1170 Query 5234 TTAAGGAAGTGAGTTCCTTAGTGTTTTGGTTTTCGGGTGGCTGCTGCTGCTCGC-CGGCA 5292 | ||| | || | | || |||||| | || | | || | ||||| Sbjct 1171 ---AAAAAGGGTGTGC-------TCTTCGTTTTC--ATCACT--TTCATCTAACTCGGCA 1216 Query 5293 TCTGGTTCTAAAGGTGAGTATAAAACTGAAAATTGAGGAATAATTTGAGCGCTAAAATTG 5352 ||| | ||||| ||| || ||||| || ||||||| ||| ||||| ||| Sbjct 1217 GAAGGTGC---AGGTGGGTAAGCTACGACAAATTCTGGCATAATTTCAGCACTAAAGTTG 1273 Query 5353 TCAGTTTCTATAAATGTTGAATTTTTTATTTTATAACTTCCGTTAGCAATTGATTTTTTG 5412 ||||||||||| |||| |||| ||| || | | | || | || || | |||| Sbjct 1274 TCAGTTTCTATGAATGATGAAGATTTGATGGAAAAGTTACCTCTGGCGATGGTTTTTGAC 1333 Query 5413 CAATTTTCATCCATTTGGTCAGAAAATAGGGtttttttGTTGTCTAATTTTGTAGCAAAG 5472 | | || | |||||| ||||| | ||||||||||||| ||||| || |||||| Sbjct 1334 GCGCTGGCTTCTAGTTGGTCTGAAAACACAATTTTTTTGTTGTCCAATTTAGTGGCAAAG 1393 Query 5473 GAGCCATATAAAGCATTGGATAATAGTTTGGCTATATTACGTAATGTTTGATTTTTGTCT 5532 ||||||||| || ||||| | ||| || ||||| | || | ||||| || || ||| Sbjct 1394 CTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTTTGGTTCTTTTCT 1453 Query 5533 TGATCTGCTTTTTCTTTTGCCATAATATTTAAGCGGACATATTCTGCAGCAACGCATTTC 5592 | |||||||||||||| || || |||| | || |||||| || ||||| ||| Sbjct 1454 TTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTATTCTTTGGCCACGCACTTC 1513 Query 5593 CATTCAGGAAATACAGTGGTTCGCTCATCAGGTAAAATTGTCACAGTCCAACCTCGGTTG 5652 || || || || | || |||| || || || | ||| ||| | ||| |||| |||| Sbjct 1514 CACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCATCCTCTGTTG 1573 Query 5653 TGTAATGTAATTATGTCTATGGATGTTACTACTTCTCCTTTTAAAGGTTCATTTGTCCAG 5712 || || ||||| | |||||| || || ||||||||||| ||||| || || |||||| Sbjct 1574 TGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCGTTAGTCCAG 1633 Query 5713 CATAATCTACCTCCTTTTTTGGAGCAAAATGGAGGTAATACATCTAAAAATTCTTCTGCT 5772 || | || || |||||| |||||||||| ||||| | | |||| | ||| || || Sbjct 1634 CACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGAAACAACTCGTCT 1693 Query 5773 GGTGGAATGGCGTCAATAGTAAAAATGCCAGGTAGTAGACTTTTATTAAAATATGATAAT 5832 || ||| ||||| || || |||||||| || || |||| | | |||||| | ||| Sbjct 1694 GGAGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGACACTCGTCAAAATA-GTCAAT 1752 Query 5833 TTTTGGTTTTTATGCATAAGAATTTGAAATTGCCATTTGTTAACTTCTATGTTTCTTTCA 5892 |||| | | | | | | ||| || ||||| | | ||| | ||||||| Sbjct 1753 TTTTTGCTCTAAGTTTTCAAGCTTTCTGAT--CCATTCTGTCGCAGCTAAGGCTCTTTCA 1810 Query 5893 AACGTGTTTAAAGGTTTTCCTGAGGGAAATGGGTGAGTTAGAGCACTGGCATACATTCCA 5952 ||| |||||||| | || |||||| || || |||||||||||||||||||| || Sbjct 1811 TACGGATTTAAAGGCTGCCCGCTGGGAAAAGGATGCGTTAGAGCACTGGCATACATGCCG 1870 Query 5953 CAAATGTCATAGACATATATTGGATCTTCTAAAACACCAATATAAGTTGGATAACATCGA 6012 || |||||||| ||||| ||||| | ||| | | ||||||||||| ||||| || ||| Sbjct 1871 CAGATGTCATACACATAAATTGGCTGTTCCATGATGCCAATATAAGTGGGATAGCAGCGA 1930 Query 6013 CCACCTCGAATGCTTGATCTGACATAGTCATACATTTCTTTTGAAGGAGCAAATAAAATA 6072 ||||| || ||||| | ||| |||||||||||||| | || || || ||||||| Sbjct 1931 CCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGGTGCTAATAAAACG 1990 Query 6073 TTGTCTAAGGTGG---AAGATAGC--AAATTTTCTGATTTAAATAGTATTTGTTTAAAGA 6127 ||||||||| | | | | || || || |||| ||| |||||| ||||| | Sbjct 1991 TTGTCTAAGTTTGCTTTATTTGGCCTAACTTCTCTG-----TATAATATTTGCTTAAAAA 2045 Query 6128 TTGCATGGGAATTTGAACTTATGGTAGGTCTTTGAAAAATATTAAAATTTGCTACAGGTA 6187 ||||||| || || || || || || |||||||||||||| ||||| || |||||| Sbjct 2046 TTGCATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATGTTAAATGAAGCATCAGGTA 2105 Query 6188 AGTTAACTGTTTCAGCTATAAAATTTTTATAAGAATTTAATAATTTGTCAACTAATTCTG 6247 |||| ||| ||| ||||| ||||| ||||| | | | ||||| |||| | | Sbjct 2106 AGTTCACTTGAGAAGCAATAAAGTTTTTGTAAGATTCTTGGAGTTTGTTTACTAGGGCCG 2165 Query 6248 AAGTTACTATTACATCTAAAACACAATATTCTAATGTTTCATCTATAATATCATA----T 6303 | || |||| || ||| |||||||| | | |||| | || || || || Sbjct 2166 ATGTCACTAACACGTCTTGCACACAATAGTGCAGCGTTTGCTGGATTATGTCGTAAGCCC 2225 Query 6304 TTAGATTTTTTAGATTGTTTCCACAGTTGTTTGTTTTCTTGGTATTCGT--CTTGATTTT 6361 | ||||| || | ||||||| ||||| ||| || || | || || || Sbjct 2226 CCACGTTTTT----TTCTCTCCACAGAGCCTTGTTGAGTTGATACTCTTCGCTGGA--TT 2279 Query 6362 TCCAATATTTGGAAGC-TGGAAAGCCATCTTCATCGATTTCATATTGACCTATCATATAG 6420 |||| ||| | | || |||||||||||| ||||| || || ||||| ||||| Sbjct 2280 TCCAGTATCT-TAGGCTTGGAAAGCCATCCTCATCTTGTTGGTAAGACCCTATTCTATAG 2338 Query 6421 AAATCATTTACAGCTTGGTATGGACAGCAACCTTTACTAATTTTTAAATTGTAAGCTTTA 6480 || |||||||| |||| ||| ||||||| ||||| | | | |||||| | Sbjct 2339 AATTCATTTACTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCTCGTAAGCCCCA 2398 Query 6481 GCAGCATTTTGCAAACTTGTGTGGGTTAGAGCGTAAGTATCTCTTACCATAACTTTTACA 6540 ||||||||| || || |||||||| || || |||| ||||||||||||| ||| ||| Sbjct 2399 GCAGCATTTCTTAAGCTAGTGTGGGTCAGCGCAAAAGTGTCTCTTACCATAAATTTAACA 2458 Query 6541 AACTGATATTTTAAATCTTGTGCCTGACAAATTCCTTCTTGCCAAATTTTATATTCATTT 6600 ||||| || || || | | ||| | || | | || ||| | || | Sbjct 2459 AACTGGTACTTGTGGTC-CGCGGCTGTGAGCTTTCCACACTCCCAATCGGCGA--AATCT 2515 Query 6601 TTTCCTGGTTTAATGAATTGGGGATTGGGAAGAGC-GTATGTAATGTCATTAAATAAAAT 6659 |||| |||| | | | ||||| || | ||| | | ||||||||| || | || Sbjct 2516 TTTC---GTTTTTCGTACTTTGGATTAGGTA-AGCAAAAAGAAATGTCATTGAACAGTAT 2571 Query 6660 TTTTCCACAGCGGGGCATAAAATTTCTCATTATTTTAAATCCTTTTGGAAGATCAAATTT 6719 ||| || | |||||||||||||| ||||||| || | ||| ||| | | Sbjct 2572 TTTACCGTTTCTTGGCATAAAATTTCTATTTATTTTGAAAGCAGGCAGAACATCCGTTCT 2631 Query 6720 GTTATTTATTACTTGAGCAGCTAATACAATTTCATCAAAGCCATTGATGTTGTGACCTAC 6779 ||| | ||| ||||| || || || || || |||||||| || ||||||||| || | Sbjct 2632 GTTGTGTATGACTTGCGCGGCCAACACGATCTCATCAAAACCGCAGATGTTGTGGCCAAT 2691 Query 6780 AATATATATTTCTATAA 6796 | ||| ||||| |||| Sbjct 2692 TACATAAATTTCAATAA 2708 Score = 174 bits (192), Expect = 3e-39 Identities = 414/619 (67%), Gaps = 10/619 (2%) Strand=Plus/Plus Query 7782 ACTTTCCTGTTGATGTTCTGAATTTCTGGGTGTTGACTGAGAA--CTACTGGTCCCGTGA 7839 ||| | | ||||||||||||||| || | | | | || || | ||||| || || | Sbjct 3685 ACTCTGCGGTTGATGTTCTGAATCTCCCGCAG--GCCGGAAAATACCACTGGGCCGGTCA 3742 Query 7840 ACTTGAACCTAAAGGAAATTTCCATAGAATCAATTTCAGCATCATTCATTGCTACTTGTC 7899 ||||||| || || ||||||||||| ||||| || || ||||| | ||| ||||| Sbjct 3743 CTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCT 3802 Query 7900 TTAAAATTTCTTGAACATCTCCACTATTATCATGATAAGCAATATCTGTCATAAATTGAT 7959 ||||||| || || ||||| || ||||| |||||||| || |||| |||||| || | Sbjct 3803 TTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCT 3862 Query 7960 CTATTTCTTCTTCTTGTAATTCTCCCATGCCTGCTCTCTGAACAGAAGTTGCTAAGTCAT 8019 | || ||||| | | ||| ||||| | |||||||||| ||| | | || |||||| Sbjct 3863 CAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAA 3922 Query 8020 TACTGATGCGAGTCATTACATTAATAAAACCATCTTGTCCATATTCTGTCCATAAACGAT 8079 | || ||||||| ||| | ||| ||||| | | || |||| ||| |||| | | Sbjct 3923 TGCTAATGCGAGACATGATGTTACTAAAAGCCTGTTCCCCATTTTCATTCCACACTCTGC 3982 Query 8080 TATAAATTACATCTCCTTCAGAATCTCTAGCCCTTAAAATTATTTGAGTTAAATTTA-AA 8138 | || | | | ||| || | ||| || || | | || || | | ||| | | Sbjct 3983 TGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCA 4042 Query 8139 TCAACATATCTAGTAAA--GGGAATTGCTAGTCTGAAAGCATGATGAAGATAATTTAATG 8196 || |||||||| ||| ||||| | || || | |||| | || |||| || Sbjct 4043 TC-ACATATCTCCCAAAAGGGGAA--GATACCCTAATTTGGTGATTTAAGTAGTTTAGTG 4099 Query 8197 TTGTTGCAATGTGTTCTGTAACaaaaaaaTACAAAACCCATCTTCTTAAAGTAAGTTCAG 8256 | || ||||||||||||| |||||||| ||| ||||| | | | ||| |||| Sbjct 4100 TGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCAT 4159 Query 8257 TAATTTCTCCCATTATATCTAGTCTTTGCATTGCTTGATAAAAATCTACAGTAAAGTTAA 8316 |||| || || | || | | || || | | |||||||| ||||| |||||||| Sbjct 4160 TAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAA 4219 Query 8317 AAAATCTTTGATTTCTAACTTGAGCTGATAATTCTTCTTCTAAAAGGCGGATTACTTCAG 8376 |||| || |||||| | | | | ||||||||||| | ||| || ||| | Sbjct 4220 AAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTCTAATAAGCGAATGGTTTCTG 4279 Query 8377 CAATAGCTGCTCTAATTTC 8395 | | ||| | |||| ||| Sbjct 4280 CCACAGCGGTCCTAACTTC 4298 >seq1393656 Length=1543 Score = 174 bits (192), Expect = 3e-39 Identities = 409/611 (67%), Gaps = 10/611 (2%) Strand=Plus/Plus Query 7790 GTTGATGTTCTGAATTTCTGGGTGTTGACTGAGAA--CTACTGGTCCCGTGAACTTGAAC 7847 ||||||||||||||| || | | | | || || | ||||| || || | ||||| Sbjct 1 GTTGATGTTCTGAATCTCCCGCAG--GCCGGAAAATACCACTGGGCCGGTCACTCTGAAC 58 Query 7848 CTAAAGGAAATTTCCATAGAATCAATTTCAGCATCATTCATTGCTACTTGTCTTAAAATT 7907 || || || ||||||||||| ||||| || || ||||| | ||| ||||| ||||||| Sbjct 59 CTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAATC 118 Query 7908 TCTTGAACATCTCCACTATTATCATGATAAGCAATATCTGTCATAAATTGATCTATTTCT 7967 || || ||||| || ||||| |||||||| || |||| |||||| || || || ||| Sbjct 119 TCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCAATCTCT 178 Query 7968 TCTTCTTGTAATTCTCCCATGCCTGCTCTCTGAACAGAAGTTGCTAAGTCATTACTGATG 8027 || | | ||| ||||| | |||||||||| ||| | | || |||||| | || ||| Sbjct 179 TCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATGCTAATG 238 Query 8028 CGAGTCATTACATTAATAAAACCATCTTGTCCATATTCTGTCCATAAACGATTATAAATT 8087 |||| ||| | ||| ||||| | | || |||| ||| |||| | | | || | Sbjct 239 CGAGACATGATGTTACTAAAAGCCTGTTCCCCATTTTCATTCCACACTCTGCTGTACACA 298 Query 8088 ACATCTCCTTCAGAATCTCTAGCCCTTAAAATTATTTGAGTTAAATTTA-AATCAACATA 8146 | | ||| || | ||| || || | | || || | | ||| | ||| ||||| Sbjct 299 ATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCATC-ACATA 357 Query 8147 TCTAGTAAA--GGGAATTGCTAGTCTGAAAGCATGATGAAGATAATTTAATGTTGTTGCA 8204 ||| ||| ||||| | || || | |||| | || |||| ||| || ||| Sbjct 358 TCTCCCAAAAGGGGAA--GATACCCTAATTTGGTGATTTAAGTAGTTTAGTGTGGTAGCA 415 Query 8205 ATGTGTTCTGTAACaaaaaaaTACAAAACCCATCTTCTTAAAGTAAGTTCAGTAATTTCT 8264 |||||||||| |||||||| ||| ||||| | | | ||| |||| |||| || Sbjct 416 ATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTAATGTCA 475 Query 8265 CCCATTATATCTAGTCTTTGCATTGCTTGATAAAAATCTACAGTAAAGTTAAAAAATCTT 8324 || | || | | || || | | |||||||| ||||| |||||||||||| Sbjct 476 CCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAAAACTGC 535 Query 8325 TGATTTCTAACTTGAGCTGATAATTCTTCTTCTAAAAGGCGGATTACTTCAGCAATAGCT 8384 || |||||| | | | | ||||||||||| | ||| || ||| || | ||| Sbjct 536 TGGTTTCTAGCAGACACAGTGAGCTCTTCTTCTAATAAGCGAATGGTTTCTGCCACAGCG 595 Query 8385 GCTCTAATTTC 8395 | |||| ||| Sbjct 596 GTCCTAACTTC 606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83332198892040