Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_030874.1 Length=29162 Score E Sequences producing significant alignments: (Bits) Value seq416950 450 2e-122 seq1393656 176 7e-40 >seq416950 Length=5269 Score = 450 bits (498), Expect = 2e-122 Identities = 1456/2248 (65%), Gaps = 76/2248 (3%) Strand=Plus/Plus Query 4230 AAAAATATT-TAAAGGTTTTAAACCTTCAGCCCAAGACATAGATTGTAAAGTATTATTTA 4288 ||||| ||| || ||||| | ||||||| ||| ||||| || ||| | || || | Sbjct 266 AAAAACATTCTAGCGGTTTAAGCCCTTCAGAATAAGGCATAGCTTTTAAGCTTTTGTTGA 325 Query 4289 A---AGTCTGTAATTTTTCCCAAAGTTCTTTTAATTCTCCCATGGAAGTTCCGTCCAACA 4345 || | || || ||||| |||||||||| | | ||| || ||| | ||||||| Sbjct 326 GCACAGACAGT---TTATCCCACAGTTCTTTTACATGTTCCACGGCAGTGTCATCCAACA 382 Query 4346 AACTTCTGTGTTTCTTGGATTTGGGTTGCTCGTAGAGTATGGTATCAGTAGATGTTGATT 4405 || || |||||||||| ||||| ||||| | ||||| || ||||| | || | Sbjct 383 TACATCGTTGTTTCTTGGGTTTGG-TTGCTTTTCGAGTAAGGCATCAGGCGGTGGCCGTC 441 Query 4406 CACTTGATGAAGAGTTTTGTCTTTCCATGGTCTTAAAGTTCTTGTCAATGTTGATTGAGT 4465 | | ||| || ||||||||||| || || | || | || || |||| || || Sbjct 442 TATGTCTACAAGGGTCTTGTCTTTCCAAGGCCTCACTGTGCGCGTTAAAGTTGTTTCGGT 501 Query 4466 TACCGTGAATGGTTGAACATTGTTCATTGAT--GTTACTAATGTTCTGCGTAGACTCAAT 4523 || ||||| || | ||| | ||| | || | | || | || ||||| Sbjct 502 GACTGTGAACGGGGCCGCGTTGCT--TTGGTTCGTAGCGAGGGTCCGTTTTAAACTCAGG 559 Query 4524 CGGGATGTCTGAAAATGATCATTTCCTTGTTGAATATCAG-CAAGATAACA---AGCTAA 4579 ||| || ||||| | | | || || || |||| |||| || || ||| || Sbjct 560 CGGCTGGTGTGAAAGCGCTGGCTCCCCTGCTGCGCGTCAGACAAG-TAGCATTTAGCCAA 618 Query 4580 CATTGTTTCATATGACAATTCAGTTTTAGGATGACCTTTGGCTCTTAATTTACCTGGGCC 4639 || ||||| | |||||||| | | |||||| || || | | ||||||| || Sbjct 619 A---GTGTCATAACATAATTCAGTAGTTGCATGACCCTTCGCCCGCAGTTTACCTTTACC 675 Query 4640 TACATATTTACAAAATTTACAAGTAATATCTTTTAAAGCATATAATTTTGGCGCCATAAA 4699 |||| ||| | ||||| | | | |||||||||||| | ||| || || | ||| Sbjct 676 CACATGCCCACAGCAAGTACAAACAGTGTTTTTTAAAGCATACAGTTTAGGAGCGAGAAA 735 Query 4700 AATTGATTCTGAACTATAAGCATCTTTACCACATTTTATACATTTAGTTTCACATTCTAC 4759 | ||||| |||||| ||||||| ||||||| ||| | ||| |||||||| || Sbjct 736 GACAGATTCAGAACTAAAAGCATCAGACTTACATTTTTCACACTGAGTCTCACATTCAAC 795 Query 4760 AAGCCAAGTTAAATCTGGATTTTTGGGATCAAAAACTAATNNNNNNNNNNNNNNNNNAAT 4819 | ||| || | | ||| ||||| ||||||||||||| ||| Sbjct 796 CAACCATGTAATAGATGGGTTTTTTGGATCAAAAACTAGCTTCCCTCCATTTTTCTTAAT 855 Query 4820 TCTATGCCTACCTTTTTGCTCCATAATGCTTCTTCCAAGTTCCGTTAGAAATAAACTGTC 4879 | || ||||| |||||||||| | | || ||| || | ||| || ||||| Sbjct 856 GCGGTGTTTACCTCTTTGCTCCATGAGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTC 915 Query 4880 TGTGTCTCCATATAAAGATTTTAATGGTCTTTTATCAATTGGAATCCCTCGATCATTTTC 4939 ||||| || || | |||||||| | | ||| || | ||| | |||| || | | Sbjct 916 AGTGTCCCCGTAGACAGATTTTATAGTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGC 975 Query 4940 ATATAAAAAATCTGACCATTCGGATATAAAGGCTCTTGTCCAAGCAAGAACAAAAGAAGC 4999 |||||||| |||| ||| || || | ||| |||| ||||| || | |||||| ||||| Sbjct 976 GTATAAAAATTCTGCCCACTCAGACACAAATACTCTAGTCCAGGCCAAAACAAACGAAGC 1035 Query 5000 AATATGTGAGGCGTATCTGTTATTAACAATAAGAGGGGAATTTAATTCCAAAGTATGTAA 5059 ||| || || ||||| ||||| || | || | ||| || || ||| ||||| ||||| Sbjct 1036 AATGTGGGAAGCGTACCTGTTGTTTTCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAA 1095 Query 5060 ACATGCCTCATCTTCATCACAATCTAGAAAGGTGATTGGTTTATAGTGATAGGTCACGTG 5119 ||| ||||| || ||| |||| ||| |||||||| ||||| | ||| |||||||| Sbjct 1096 GCATATGTCATCATCTTCAGTTTCTAAAAACGTGATTGGCTTATACTTATATGTCACGTG 1155 Query 5120 ATT-TATGACACTATAAATAGAGGTCTCGGTG-TCAAGATTTTGATCATTGAGTAGCTGT 5177 | | | | |||||| || ||| ||| || |||| |||| | | | | Sbjct 1156 ACTATCTTTGGGTATAAAAAG-GGT----GTGCTCTTCGTTTTCATCACT---TTCATCT 1207 Query 5178 GGCTGCTCAGAATCAGCTCTTTTTAAAGGTGAGTATAAAACTGTAAATTGGGGTATAATT 5237 || ||||| || ||||| ||| || ||||| || |||||| Sbjct 1208 AACTCGGCAGAAGGTGC---------AGGTGGGTAAGCTACGACAAATTCTGGCATAATT 1258 Query 5238 TCTGCGCTGTAATTATCTGTTTCTATAAATGTAGAATTTTTGATTTTATATGTTCCTTTG 5297 || || || | || || |||||||| |||| ||| |||||| | | | ||| || Sbjct 1259 TCAGCACTAAAGTTGTCAGTTTCTATGAATGATGAAGATTTGATGGAAAAGTTACCTCTG 1318 Query 5298 GCTATGTCTTTTTTACAAA-TGTCATCCATTTGATCAGAAAAAACTGtttttttATTATC 5356 || ||| ||||| || || | || | ||| || ||||| || ||||||| || || Sbjct 1319 GCGATGG-TTTTTGACGCGCTGGCTTCTAGTTGGTCTGAAAACACAATTTTTTTGTTGTC 1377 Query 5357 TAATTTGGTAGCAAATGAGCCATATAAGGCATTTGATAATAATTTTGATATATTTCTTAA 5416 ||||| || ||||| |||||||||||| || || | || || | ||| ||| | Sbjct 1378 CAATTTAGTGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCAT 1437 Query 5417 AGTTTGAtttttttCTTTATCTGCTNNNNNNNNNNNNNNNATATTTAGTTTTACATATTC 5476 ||||| || |||||||| |||||| || ||||| | || ||||| Sbjct 1438 GGTTTGGTTCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTATTC 1497 Query 5477 AGCTGCTATACATTTCCATTCTGGAAAAATTGTACTTCTATCATCAGGTAAAATTTCTAC 5536 || | || ||||| ||||| || || || |||| || || || | ||| || Sbjct 1498 TTTGGCCACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCAC 1557 Query 5537 CTTCCATCCTCTATTATGTAATGTAATTATATCAATAGTAGTAGCAATTTCACCTTTTAA 5596 ||||||||| || || || ||||| | || |||| |||||| | ||| ||| || Sbjct 1558 TGCCCATCCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAA 1617 Query 5597 AGGTTCATTTGTCCAGCATAATCGACCTCCTTTTTTAGAACAAAAAGGAGGAAGTAAATC 5656 ||| || || |||||||| | | || |||||| | || ||||| ||||| ||| ||| Sbjct 1618 AGGCTCGTTAGTCCAGCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATC 1677 Query 5657 TAAGAAA-TGTTCAGGTGGGGGCGTTGCATCAATTGTAAGTATTCCAGGAAGTAAATTTT 5715 |||||| || ||| || || || || || | || || ||||| | | | Sbjct 1678 -AAGAAACAACTCGTCTGGAGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGACACT 1736 Query 5716 TATCAAAATATGAAATTGTTT--TATATTTTTGTAA--ATAGTAAACATATTTATTAATT 5771 |||||||| |||| ||| | || ||| || | | | | ||| | Sbjct 1737 CGTCAAAATAGTCAATTTTTTGCTCTAAGTTTTCAAGCTTTCTGATC-CATTCTGTCGCA 1795 Query 5772 TCAATATTTCTTTCAAATGTATTTAGGGGTTTTCCAGCTGGG-AATGGATGTGTTAGTGC 5830 | | ||||||| | | ||||| || | || |||||| || ||||| ||||| || Sbjct 1796 GCTAAGGCTCTTTCATACGGATTTAAAGG-CTGCCCGCTGGGAAAAGGATGCGTTAGAGC 1854 Query 5831 ACTGGCATACATTCCACATATATCATAAACATATACTGGTTCTTCTAATATTCCTATATA 5890 |||||||||||| || || || ||||| ||||| | ||| | ||| | || || ||||| Sbjct 1855 ACTGGCATACATGCCGCAGATGTCATACACATAAATTGGCTGTTCCATGATGCCAATATA 1914 Query 5891 ATTTAAATAACATCGTCCTCCTCTTATACTACTTCTAACATATTCATACATTTCTTTTGA 5950 | | ||| || || || || | || || | || || ||||||||||| | || Sbjct 1915 AGTGGGATAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGA 1974 Query 5951 AGGAGCATATAGTATTTCATCTAAATTTG--------GACCTAAAAGATTTTCAGATTTA 6002 || || ||| | | ||||| |||| | ||||| ||| | | Sbjct 1975 TGGTGCTAATAAAACGTTGTCTAAGTTTGCTTTATTTGGCCTAA-----CTTC---TCTG 2026 Query 6003 TATAAACATTGTTTAAAAATTGCATGTGAATTAGAGCTAATAGTTGGTCTTTGAAAAATA 6062 ||||| ||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 2027 TATAATATTTGCTTAAAAATTGCATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATG 2086 Query 6063 TTAAAATTTGAATTTGGTAAGTTTACTGCTTCTGCTATAAAATTTTTATAAGATAATAGT 6122 ||||| | || |||||||| ||| || ||||| ||||| |||||| | | Sbjct 2087 TTAAATGAAGCATCAGGTAAGTTCACTTGAGAAGCAATAAAGTTTTTGTAAGATTCTTGG 2146 Query 6123 AATTTGTTTACAAGTTCTGAAGTTACATTTACATCTAAAATACAATAATCTATTGTTTCT 6182 | ||||||||| || | || || || || ||| | |||||| | | |||| Sbjct 2147 AGTTTGTTTACTAGGGCCGATGTCACTAACACGTCTTGCACACAATAGTGCAGCGTTTGC 2206 Query 6183 TGAACAATGTCATAA----CTAGGTTTTTTGGATTGTTTCCAAATTTGTTTATTNNNNNN 6238 || | ||||| ||| | | |||||| || | |||| | || || Sbjct 2207 TGGATTATGTCGTAAGCCCCCACGTTTTT----TTCTCTCCACAGAGCCTTGTTGAGTTG 2262 Query 6239 NNNNNNNNCACTATTTTTCCAGTATTTACAAGC-AGGAAAACCATCTTCATCAGTTTGGT 6297 | || |||||||||| | | || ||||| ||||| ||||| ||||| Sbjct 2263 ATACTCTTCGCTGGATTTCCAGTATCT-TAGGCTTGGAAAGCCATCCTCATCTTGTTGGT 2321 Query 6298 AGGTTCCTAACATATAAAATTCATTTACTGCGGTATATGGACAGCAGCCTTTTTTAATAT 6357 | | |||| |||| |||||||||||||| || ||||||| ||||||| | | Sbjct 2322 AAGACCCTATTCTATAGAATTCATTTACTGCTTCGTACGGACAGCTTCCTTTTTCTACAG 2381 Query 6358 TTAAATTATAAGCTTTAGCTGCATTTTCTAAACTGGTATGGGTTAAAGCGTAAGTATCTC 6417 | | ||||| ||| |||||| ||| || || ||||| | || |||| |||| Sbjct 2382 GCAGCTCGTAAGCCCCAGCAGCATTTCTTAAGCTAGTGTGGGTCAGCGCAAAAGTGTCTC 2441 Query 6418 TAACCATAACTTTTACAAATTGGTATTT 6445 | ||||||| ||| ||||| ||||| || Sbjct 2442 TTACCATAAATTTAACAAACTGGTACTT 2469 Score = 176 bits (194), Expect = 7e-40 Identities = 424/637 (67%), Gaps = 6/637 (1%) Strand=Plus/Plus Query 7670 ACTTTCCTGTTGATATTCTGAATTTCTCGATGTTGACTGAGAAT--CACTGGTCCCGTTA 7727 ||| | | |||||| |||||||| || || | | | || ||| |||||| || || | Sbjct 3685 ACTCTGCGGTTGATGTTCTGAATCTCCCGCAG--GCCGGAAAATACCACTGGGCCGGTCA 3742 Query 7728 GTTTGAACCTAAAGGAAATTTCCATAGAATCAATATCAGCATCATTCATGGCTACTTGTT 7787 | ||||||| || || ||||||||||| ||||| || || ||||| | || ||||| | Sbjct 3743 CTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCT 3802 Query 7788 TTAAAATTTCTTCTATATCTCCACTATTATCATGATAAGCAATATCTGTCATTAGTTGAT 7847 ||||||| || | ||||| || ||||| |||||||| || |||| ||| | || | Sbjct 3803 TTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCT 3862 Query 7848 CAATTTCTT-CTTCTGGCACTTCTCCCATTCCTGCTCGTTCTACAGACATTGCTAAATCA 7906 |||| |||| || || || ||||| | ||||||| || || | || || ||| Sbjct 3863 CAATCTCTTCCTGCTCTAAC-TCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCA 3921 Query 7907 TTACTTATTCTATTCATTACATTAATAAAAGCATCCTGTCCATAATCTGTCCAAAGTCTA 7966 | || || | | ||| | ||| ||||||| | | |||| || |||| | ||| Sbjct 3922 ATGCTAATGCGAGACATGATGTTACTAAAAGCCTGTTCCCCATTTTCATTCCACACTCTG 3981 Query 7967 CTATAAATAACTTCTCCTACTGTATTTCTAGCTCTTAAAATAATTTGAGCTAAATTTAAA 8026 || || | || || ||| || ||||| ||||| | | | || || | ||| | Sbjct 3982 CTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGC 4041 Query 8027 TCCACAAATCTTGTAAATGGATTGGCCATTCTAAAAGCCTGATGAAGATAATTTAAACTT 8086 |||| |||| ||| || | | |||| |||| | || |||| | Sbjct 4042 ATCACATATCTCCCAAAAGGGGAAGATACCCTAATTTGGTGATTTAAGTAGTTTAGTGTG 4101 Query 8087 GAGGCCACATGTTCAGTAACaaaaaaaTATAACACCCATCTACGTAAAACAAGTTCAGTA 8146 | || | ||||| | |||||||| | | |||||| | | | | |||| || Sbjct 4102 GTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTA 4161 Query 8147 ATTTCACCCAAAGCTTCTAAACGTTGCATGACTTGATAAAAATTTACAGTAAAATTaaaa 8206 || ||||| | || || ||||| || || || | |||||||||||||| ||| |||||| Sbjct 4162 ATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAA 4221 Query 8207 aaaTTTTGATTTCTAACTTGAACAGATAATTCTTCTTCTAATAAACGTATAACTTCTGCA 8266 || | || |||||| | |||| | |||||||||||||| || || |||||| Sbjct 4222 AACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTCTAATAAGCGAATGGTTTCTGCC 4281 Query 8267 ATAGCATTTCTAACTTCTTCTTCAAATGTAATTTCCT 8303 | ||| | |||||||| |||||| ||| |||| Sbjct 4282 ACAGCGGTCCTAACTTCGCTTTCAAAGCTAAGCTCCT 4318 >seq1393656 Length=1543 Score = 176 bits (194), Expect = 7e-40 Identities = 419/629 (67%), Gaps = 6/629 (1%) Strand=Plus/Plus Query 7678 GTTGATATTCTGAATTTCTCGATGTTGACTGAGAAT--CACTGGTCCCGTTAGTTTGAAC 7735 |||||| |||||||| || || | | | || ||| |||||| || || | | ||||| Sbjct 1 GTTGATGTTCTGAATCTCCCGCAG--GCCGGAAAATACCACTGGGCCGGTCACTCTGAAC 58 Query 7736 CTAAAGGAAATTTCCATAGAATCAATATCAGCATCATTCATGGCTACTTGTTTTAAAATT 7795 || || || ||||||||||| ||||| || || ||||| | || ||||| |||||||| Sbjct 59 CTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAATC 118 Query 7796 TCTTCTATATCTCCACTATTATCATGATAAGCAATATCTGTCATTAGTTGATCAATTTCT 7855 || | ||||| || ||||| |||||||| || |||| ||| | || ||||| ||| Sbjct 119 TCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCAATCTCT 178 Query 7856 T-CTTCTGGCACTTCTCCCATTCCTGCTCGTTCTACAGACATTGCTAAATCATTACTTAT 7914 | || || || ||||| | ||||||| || || | || || ||| | || || Sbjct 179 TCCTGCTCTAAC-TCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATGCTAAT 237 Query 7915 TCTATTCATTACATTAATAAAAGCATCCTGTCCATAATCTGTCCAAAGTCTACTATAAAT 7974 | | ||| | ||| ||||||| | | |||| || |||| | ||| || || | Sbjct 238 GCGAGACATGATGTTACTAAAAGCCTGTTCCCCATTTTCATTCCACACTCTGCTGTACAC 297 Query 7975 AACTTCTCCTACTGTATTTCTAGCTCTTAAAATAATTTGAGCTAAATTTAAATCCACAAA 8034 || || ||| || ||||| ||||| | | | || || | ||| | |||| | Sbjct 298 AATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCATCACATA 357 Query 8035 TCTTGTAAATGGATTGGCCATTCTAAAAGCCTGATGAAGATAATTTAAACTTGAGGCCAC 8094 ||| ||| || | | |||| |||| | || |||| | | || | Sbjct 358 TCTCCCAAAAGGGGAAGATACCCTAATTTGGTGATTTAAGTAGTTTAGTGTGGTAGCAAT 417 Query 8095 ATGTTCAGTAACaaaaaaaTATAACACCCATCTACGTAAAACAAGTTCAGTAATTTCACC 8154 ||||| | |||||||| | | |||||| | | | | |||| |||| ||||| Sbjct 418 GTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTAATGTCACC 477 Query 8155 CAAAGCTTCTAAACGTTGCATGACTTGATAAAAATTTACAGTAAAATTaaaaaaaTTTTG 8214 | || || ||||| || || || | |||||||||||||| ||| |||||||| | || Sbjct 478 TAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAAAACTGCTG 537 Query 8215 ATTTCTAACTTGAACAGATAATTCTTCTTCTAATAAACGTATAACTTCTGCAATAGCATT 8274 |||||| | |||| | |||||||||||||| || || |||||| | ||| | Sbjct 538 GTTTCTAGCAGACACAGTGAGCTCTTCTTCTAATAAGCGAATGGTTTCTGCCACAGCGGT 597 Query 8275 TCTAACTTCTTCTTCAAATGTAATTTCCT 8303 |||||||| |||||| ||| |||| Sbjct 598 CCTAACTTCGCTTTCAAAGCTAAGCTCCT 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 82150361925625