Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_031948.1 Length=31481 Score E Sequences producing significant alignments: (Bits) Value seq416950 773 0.0 seq1393656 316 4e-82 >seq416950 Length=5269 Score = 773 bits (856), Expect = 0.0 Identities = 1684/2487 (68%), Gaps = 57/2487 (2%) Strand=Plus/Plus Query 4551 GGTTTCAGGCCTTCTGCATAAGGCATGTTTTTTAGAGTAGTTTGCAAAGTA-AG-CAATT 4608 ||||| || ||||| | ||||||||| ||||| | |||| || | || || || Sbjct 280 GGTTTAAGCCCTTCAGAATAAGGCATAGCTTTTAAGCT--TTTGTTGAGCACAGACAGTT 337 Query 4609 TGTCCCAGAGTTCTCTCAATTGGTCCACGGCAGCTCCATCCAAGTTGTTTCTGTGTTTCT 4668 | ||||| |||||| | | || |||||||||| ||||||| | || ||||||| Sbjct 338 TATCCCACAGTTCTTTTACATGTTCCACGGCAGTGTCATCCAACATACATCGTTGTTTCT 397 Query 4669 TGGATTTGGGAACCTCTTGCTGTATGGAACCAGACGGTGGGTGTCCAGGGGGTGCAGGGT 4728 ||| ||||| | | | | ||| || | ||| |||||| ||| | | ||||| Sbjct 398 TGGGTTTGGTTGCTTTTCGA-GTAAGGCATCAGGCGGTGGCCGTCTATGTCTACAAGGGT 456 Query 4729 TTTGTCTTTCCACGGTCTTAGCTTCCTTGTAAGGGTGGTTTCTGTGACCGTGAAGGGTTG 4788 ||||||||||| || || | | | || | || ||||| ||||| ||||| || Sbjct 457 CTTGTCTTTCCAAGGCCTCACTGTGCGCGTTAAAGTTGTTTCGGTGACTGTGAACGGGGC 516 Query 4789 CACGTGGGCCTGAACGCTGGCCAGTGTGCGACGCAGGCTCATCCTGCTGGTCTGGAAGAG 4848 | ||| | || | || || || || | |||| | |||||| || ||| | Sbjct 517 CGCGTTGCTTTGGTTCGTAGCGAGGGTCCGTTTTAAACTCAGGCGGCTGGTGTGAAAGCG 576 Query 4849 ATCGTTTCCGTGTTGCAAGTCAGCCAAGTAACAGGCCTTAAGCACA---TCATAAGAGAG 4905 | | | || || ||| ||||| |||||| || ||| || | |||||| | | Sbjct 577 CTGGCTCCCCTGCTGCGCGTCAGACAAGTAGCAT---TTAGCCAAAGTGTCATAACATAA 633 Query 4906 GGTGGAGGTAGCATGCCCTTTGGCTCGGAGCTTCCCTTTTCCCACGTGACCGCACGTGGG 4965 | || ||||| || || || || || || ||||| ||||| || || || | Sbjct 634 TTCAGTAGTTGCATGACCCTTCGCCCGCAGTTTACCTTTACCCACATGCCCACAGCAAGT 693 Query 4966 GCAGGTAGTATCTTTCAGAGCATACAGCTTAGGAGCTAGGTATACTGATTCTGAGCTGTA 5025 || ||| | ||| | ||||||||| |||||||| || | || ||||| || || | Sbjct 694 ACAAACAGTGTTTTTTAAAGCATACAGTTTAGGAGCGAGAAAGACAGATTCAGAACTAAA 753 Query 5026 GGCATCCCCTCCGCACTTTTCACACTGAGTTTCACATTCAACTAACCATGT--TAGCTCA 5083 ||||| || |||||||||||||| ||||||||||| |||||||| ||| | Sbjct 754 AGCATCAGACTTACATTTTTCACACTGAGTCTCACATTCAACCAACCATGTAATAGATGG 813 Query 5084 GGTTTGGCTGGGTCAAATACTAAGCTGCCC-CCAttttttttGAGTCTTTTCTTACCTTT 5142 | ||| ||| ||||| |||| ||| ||| |||||||| || | | | |||||| | Sbjct 814 GTTTTT--TGGATCAAAAACTA-GCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCT 870 Query 5143 GGCCTCCATGAGTCTGTACCCTTCCTCGGTGCTAAAGATGCTGTCCGTGTCCCCGTAGAC 5202 ||||||||| | || ||| || ||||| ||| | |||||| |||||||||||||| Sbjct 871 TTGCTCCATGAGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGAC 930 Query 5203 AGATTTTAGAGGGCGCTGATCCAGGGGCGTGCCAGCGTCATCCTCGTAGAGAAACTGAGA 5262 |||||||| || |||| || ||| | || ||| || |||| | ||| | | Sbjct 931 AGATTTTATAGTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGC 990 Query 5263 CCATTCTGACACAAATGCCCTGGTCCAGGCCAAAACAAAGGAGGCAATTTGAGAGGGGTA 5322 ||| || ||||||||| | || ||||||||||||||||| || ||||| || || | ||| Sbjct 991 CCACTCAGACACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTA 1050 Query 5323 CCTGTTATTGGCTATCAGTGGGGAGGCCCACTCCAGGGTGTGGAGGCAGAAGTCATCATC 5382 |||||| || |||| | || ||| || | ||||| | ||| | ||||||||| Sbjct 1051 CCTGTTGTTTTCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATC 1110 Query 5383 CTCTGCATCTAGAAATATGATTGGCTTGTAAGTGTATG--ACGTCACATTACCGTGAGAA 5440 || | |||| ||| |||||||||| || | |||| |||| || | | || | | Sbjct 1111 TTCAGTTTCTAAAAACGTGATTGGCTTATACTTATATGTCACGTGACTAT-CTTTGGGTA 1169 Query 5441 ATAAAAGGGGGTTCGGGGTCATCCTTCTCCGCATTGCTCGTGGACGGCGGCGGAGAGGGC 5500 ||||||| || | || || || || || | || | | |||| || Sbjct 1170 TAAAAAGGGTGTGC----TCTTCGTTTTCATCACTT-TCATCTAACTCGGCAGA------ 1218 Query 5501 GGAGCAGCGGCAGGTGGGTACGCTACGACAAATTCTGGCATGATTTCTGCGCACAGGTTA 5560 || ||||||||||| |||||||||||||||||||| ||||| || | | ||| Sbjct 1219 -----AGGTGCAGGTGGGTAAGCTACGACAAATTCTGGCATAATTTCAGCACTAAAGTTG 1273 Query 5561 TCTGTCTCTATGTAAGAAGAAGATTTGACTATGTAAGAT-CCGGAAGCAATTTCTTGTGA 5619 || || |||||| | || |||||||||| | ||| | || || || || ||| Sbjct 1274 TCAGTTTCTATGAATGATGAAGATTTGA-TGGAAAAGTTACCTCTGGCGATGGTTTTTGA 1332 Query 5620 CGTGTGGGGGTCAATTTGGTCAGAAAATACAGtttttttGTTGTCTAACTTCGTGGCAAA 5679 || | || || | |||||| ||||| ||| ||||||||||||| || || |||||||| Sbjct 1333 CGCGCTGGCTTCTAGTTGGTCTGAAAACACAATTTTTTTGTTGTCCAATTTAGTGGCAAA 1392 Query 5680 CGACCCATAGAGGGCGTTGGAGAGTAGCTTGGCAATGCTGCGCATGGTTTGGTTCTTGCT 5739 ||||| | ||||||||| |||||||| || ||||| ||||||||||||||||| Sbjct 1393 GCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTTTGGTTCTTTTC 1452 Query 5740 TTTATCTGCCAGCTCTTTGGCCTGAATGTTAAGTTGCACATATTCTCTAGCAAGACATTT 5799 ||| ||||| |||||||| ||||| || ||||| |||||| | || | || || Sbjct 1453 TTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTATTCTTTGGCCACGCACTT 1512 Query 5800 CCACTCTGGGAATATGGTGGCTCTCTCATCGGGGACAAGGCGGACGGTCCAACCTCTGTT 5859 |||||||||||| ||||| | ||| || || || | || ||| || | ||| |||||||| Sbjct 1513 CCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCATCCTCTGTT 1572 Query 5860 ATGTAAAGTGATGACATCAATGGTAGTGGCAATTTCTCCTCGCAATGGCTCATTGGTCCA 5919 || ||||| || | || || | ||| || | |||||||||||| ||||| || ||||| Sbjct 1573 GTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCGTTAGTCCA 1632 Query 5920 ACAGAGCCGCCCGCCTTTGCGTGAGCAGAATGGGGGAAGCACATCCAAGTACTCATCCGC 5979 || |||| |||||||| | ||||| || || || || |||| | || || | Sbjct 1633 GCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGAAACAACTCGTC 1692 Query 5980 gggggggTCTGCATCGATGGTCAAGATGCCCGGGAGCAG-CTCTGGGTCAAAATAGCTGA 6038 || || || || |||||||| || ||||| || || || | || |||||||||| | Sbjct 1693 TGGAGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGACACT-CGTCAAAATAGTCAA 1751 Query 6039 TGGTTT--TCTGGCTTTGCATCTTTACTTCGTAACA-CCTG--ACAGCCAGGGCCCGCTC 6093 | ||| ||| ||| || || || | || ||| |||| | ||| | || Sbjct 1752 TTTTTTGCTCTAAGTTTTCAAGCTTTCT--GATCCATTCTGTCGCAGCTAAGGCTCTTTC 1809 Query 6094 GTAAGGATTAAGAGGCGGGCCGGCGGGAAAAGGATGGGTGAGGGCGCTAGCATACATGCC 6153 || ||||| | |||| | ||| |||||||||||| || || || || ||||||||||| Sbjct 1810 ATACGGATTTAAAGGCTGCCCGCTGGGAAAAGGATGCGTTAGAGCACTGGCATACATGCC 1869 Query 6154 ACATATGTCATACACGTACACAGGTTGCTTTAAAATGCCTATGTAAGTGGGGTAACACCT 6213 || ||||||||||| || | || || | | ||||| || |||||||| || || | Sbjct 1870 GCAGATGTCATACACATAAATTGGCTGTTCCATGATGCCAATATAAGTGGGATAGCAGCG 1929 Query 6214 TCCCCCTCTGATGCTGGCGCGAACATACTCATACATCTCATTAGAGGGTGCCAGCACAGT 6273 || || | |||||| ||| || || |||||||| |||| ||| ||||| | | | Sbjct 1930 ACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGGTGCTAATAAAAC 1989 Query 6274 GGTGCCCATGTGGGGCTGGTCGGGCTTTTCTGCTCTGTAGAGAATTTGTTTAAAAATAGC 6333 | || | | || | | | ||| | || ||||||| | ||||| |||||||| || Sbjct 1990 GTTGTCTAAGTTTGCTTTATTTGGCCTAACTTCTCTGTATAATATTTGCTTAAAAATTGC 2049 Query 6334 ATGGGAGTTGGAACTTATAGTGGGACGCTGGAAGACATTGAAGGACGCCGCAGGTAAGTT 6393 ||| ||||| || || |||||||| | || || | || || || || |||||||||| Sbjct 2050 ATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATGTTAAATGAAGCATCAGGTAAGTT 2109 Query 6394 TAC-GGACTGCA-CCACGAAGGTCTGGTAGGCCTCGGTAAGTTTCTGTACCAGCTGGGTG 6451 || || | | | | ||| | | ||| | || ||||| | ||| || | Sbjct 2110 CACTTGA--GAAGCAATAAAGTTTTTGTAAGATTCTTGGAGTTTGTTTACTAGGGCCGAT 2167 Query 6452 GTCACTTCCACATCCAGTGCGCAGTAGTCAAGGGTGCTCTGAATGATGTCGTAAGCGCCC 6511 |||||| ||| || | | || |||| || || ||| || ||||||||||| ||| Sbjct 2168 GTCACTAACACGTCTTGCACACAATAGTGCAGCGTTTGCTGGATTATGTCGTAAGCCCCC 2227 Query 6512 TTTTTGCTCTCTATCCACAGCTGTTTGTTCTCTGCGTACTCTGC-CTGATCTTTCCAGTA 6570 || | ||| ||||||| ||||| | |||||| | ||| ||||||||| Sbjct 2228 ACGTTTTTTTCTCTCCACAGAGCCTTGTTGAGTTGATACTCTTCGCTG-GATTTCCAGTA 2286 Query 6571 CTTGACGTCGGGAAAGCCATCAGAGTCTTGCTGGTAAGTGCCTAGCATGTAAAACTCATT 6630 | | | ||||||||||| ||||| ||||||| |||| | || || ||||| Sbjct 2287 TCTTAGGCTTGGAAAGCCATCCTCATCTTGTTGGTAAGACCCTATTCTATAGAATTCATT 2346 Query 6631 AACGGCCTGGTAGGGACAGCACCCCTTGGCCACTGGAAGGCTGTAAGCCTTGGCAGCGTT 6690 || || | ||| ||||||| || || | || || || ||||||| ||||| || Sbjct 2347 TACTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCTCGTAAGCCCCAGCAGCATT 2406 Query 6691 TCTCAAGCTGGTGTGAGTCAAAGTGAAAGTGTCACGCACCATAAACTTTATGTATTGGCT 6750 ||| ||||| ||||| |||| | |||||||| | |||||||| || | | ||| Sbjct 2407 TCTTAAGCTAGTGTGGGTCAGCGCAAAAGTGTCTCTTACCATAAATTTAACAAACTGGTA 2466 Query 6751 TTTTAAATCTG-AGCTCAGAAGCTGGCCCTGTTCCCACTCGGTGAAGTCTTTTCTTGGAA 6809 || || | ||| | |||| || ||||| |||| ||| ||||||| | Sbjct 2467 CTTGTGGTCCGCGGCTGTG-AGCTTTCCACACTCCCAATCGGCGAAATCTTTTCGTTTTT 2525 Query 6810 AGTAAGCTGGGTTTGGCAGGGAGTAAGTAACATCATTAAAGAGCAACCTCCCAGCTCGCG 6869 ||| ||| || || | | | ||| || ||||| || || | | || || | Sbjct 2526 CGTACTTTGGATTAGGTAAGCAAAAAGAAATGTCATTGAACAGTATTTTACCGTTTCTTG 2585 Query 6870 GCATAAAGTTTCTGGTAATTTCAAAGACTGGAGGGATGTCCGCGCGTGTACT-TACAACT 6928 ||||||| ||||| | |||| || | || | | |||| | ||| | || ||| Sbjct 2586 GCATAAAATTTCTATTTATTTTGAAAGCAGGCAGAACATCCGTTC-TGTTGTGTATGACT 2644 Query 6929 TGGGCGGCCAAGAGTATTTCATCAAACCCTGTGATGTTGTGGCCTACCACATAAACCTCA 6988 || |||||||| | || |||||||| || |||||||||||| | ||||||| ||| Sbjct 2645 TGCGCGGCCAACACGATCTCATCAAAACCGCAGATGTTGTGGCCAATTACATAAATTTCA 2704 Query 6989 ATGAACTTGGGAGTTCCCTTTAGCTTT 7015 || |||| ||| | || ||| ||||| Sbjct 2705 ATAAACTGTGGACTGCCTTTTGGCTTT 2731 Score = 316 bits (350), Expect = 4e-82 Identities = 394/538 (73%), Gaps = 4/538 (1%) Strand=Plus/Plus Query 8019 AAACACTACCGGTCCCGTTACCTTGAACCTAAAAGAGAGTTCCATAGAATCAATCTCTGC 8078 ||| || || || || || || ||||||| ||||| | ||||||||| ||||| ||||| Sbjct 3723 AAATACCACTGGGCCGGTCACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGC 3782 Query 8079 ATCATTAACAGCCACCTGTCTAAGAATCTCCCCCACATCTCCGCTATTGTCATGGTAGGC 8138 |||||||| ||||| || | | |||||| | ||| |||||||| || || || || || Sbjct 3783 GTCATTAACTGCCACTTGCTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGC 3842 Query 8139 GATGTCGGCCATGAACTGCTCCATCTCTTCCTCCTCTAACTCTCCCAGCCCCGCTCTCTC 8198 || || ||||| |||||||| |||||||||| |||||||||||| ||| |||||||| Sbjct 3843 TATTTCTGCCATAAACTGCTCAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTC 3902 Query 8199 CACCGTGGCAGCCAGGTC--TCCTGATACGCGCTCCATAACTTGACTAAAGGCATTTTCT 8256 || |||||||||| ||| | || || ||| ||| | | |||||| || | ||| Sbjct 3903 AACTGTGGCAGCCAAGTCAATGCTAAT--GCGAGACATGATGTTACTAAAAGCCTGTTCC 3960 Query 8257 CCCATCTCATTCCAAATTCTGCTGTACACTACCTGTCCCTCGCTGTCTCTGGCTCGCATG 8316 || | |||||||| | |||||||||||| | ||||| || || |||||||| ||| Sbjct 3961 CCATTTTCATTCCACACTCTGCTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATT 4020 Query 8317 ACCACCTGAGCTAGCTCTAGGTCTACCCATCGGGCACTAGGGGGATACAGCCTCAGATTG 8376 || ||||| || || | || || ||| || ||||| | | | ||| | | | Sbjct 4021 ACTACCTGCGCCAGATTAAGCATCACATATCTCCCAAAAGGGGAAGATACCCTAATTTGG 4080 Query 8377 TGGTGTAAGTAATTTAGGGTTGTGGCAATATGCTCGGCTACAAAGAAATACATGACCCAG 8436 || | |||||| ||||| || || ||||| || || || ||||| || |||| |||||| Sbjct 4081 TGATTTAAGTAGTTTAGTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAG 4140 Query 8437 CGCCGGATGGTAAGTTCATTTATGTTGCCCAACATCTCTAGCCTCTGGATGACCTCATAG 8496 || ||| || |||||| |||| || | | ||| | | ||| || |||||||| Sbjct 4141 CGTTGGAGAGTTGTTTCATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAA 4200 Query 8497 AAGTCTACTGCAAAATTAAAAAATTGCTCATTTCTGGCAGAGACTGTGAGTTCTTCTT 8554 || | ||| ||||| |||||||| |||| ||||| ||||| || ||||| ||||||| Sbjct 4201 AAATTTACAGCAAAGTTAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTT 4258 >seq1393656 Length=1543 Score = 316 bits (350), Expect = 4e-82 Identities = 394/538 (73%), Gaps = 4/538 (1%) Strand=Plus/Plus Query 8019 AAACACTACCGGTCCCGTTACCTTGAACCTAAAAGAGAGTTCCATAGAATCAATCTCTGC 8078 ||| || || || || || || ||||||| ||||| | ||||||||| ||||| ||||| Sbjct 31 AAATACCACTGGGCCGGTCACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGC 90 Query 8079 ATCATTAACAGCCACCTGTCTAAGAATCTCCCCCACATCTCCGCTATTGTCATGGTAGGC 8138 |||||||| ||||| || | | |||||| | ||| |||||||| || || || || || Sbjct 91 GTCATTAACTGCCACTTGCTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGC 150 Query 8139 GATGTCGGCCATGAACTGCTCCATCTCTTCCTCCTCTAACTCTCCCAGCCCCGCTCTCTC 8198 || || ||||| |||||||| |||||||||| |||||||||||| ||| |||||||| Sbjct 151 TATTTCTGCCATAAACTGCTCAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTC 210 Query 8199 CACCGTGGCAGCCAGGTC--TCCTGATACGCGCTCCATAACTTGACTAAAGGCATTTTCT 8256 || |||||||||| ||| | || || ||| ||| | | |||||| || | ||| Sbjct 211 AACTGTGGCAGCCAAGTCAATGCTAAT--GCGAGACATGATGTTACTAAAAGCCTGTTCC 268 Query 8257 CCCATCTCATTCCAAATTCTGCTGTACACTACCTGTCCCTCGCTGTCTCTGGCTCGCATG 8316 || | |||||||| | |||||||||||| | ||||| || || |||||||| ||| Sbjct 269 CCATTTTCATTCCACACTCTGCTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATT 328 Query 8317 ACCACCTGAGCTAGCTCTAGGTCTACCCATCGGGCACTAGGGGGATACAGCCTCAGATTG 8376 || ||||| || || | || || ||| || ||||| | | | ||| | | | Sbjct 329 ACTACCTGCGCCAGATTAAGCATCACATATCTCCCAAAAGGGGAAGATACCCTAATTTGG 388 Query 8377 TGGTGTAAGTAATTTAGGGTTGTGGCAATATGCTCGGCTACAAAGAAATACATGACCCAG 8436 || | |||||| ||||| || || ||||| || || || ||||| || |||| |||||| Sbjct 389 TGATTTAAGTAGTTTAGTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAG 448 Query 8437 CGCCGGATGGTAAGTTCATTTATGTTGCCCAACATCTCTAGCCTCTGGATGACCTCATAG 8496 || ||| || |||||| |||| || | | ||| | | ||| || |||||||| Sbjct 449 CGTTGGAGAGTTGTTTCATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAA 508 Query 8497 AAGTCTACTGCAAAATTAAAAAATTGCTCATTTCTGGCAGAGACTGTGAGTTCTTCTT 8554 || | ||| ||||| |||||||| |||| ||||| ||||| || ||||| ||||||| Sbjct 509 AAATTTACAGCAAAGTTAAAAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTT 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 88691364133540