Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2852841 95.1 1e-14 seq2204228 89.7 4e-13 seq2297319 87.8 1e-12 seq2052140 84.2 2e-11 seq1180450 84.2 2e-11 >seq2852841 Length=1350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| |||||| | || |||||||| || || ||||| || || ||| | Sbjct 733 AAAATGCAGATATTCGTGAAGACATTGACCGGAAAGACCATAACTCTTGAGGTGGAGAGC 792 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| || | | | || | ||| || || || || || || | ||| ||| Sbjct 793 TCAGATACTATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATTCCCCCTGAT 852 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || || || || ||||| |||||||| || || ||| | ||| | || ||||| Sbjct 853 CAGCAGAGGCTCATTTTTGCTGGCAAACAGCTTGAGGATGGCCGAACCCTCGCAGATTAT 912 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 | ||||||||||||||||||||||||||||| Sbjct 913 CACATTCAGAAGGAATCTACTCTTCACATGGT 944 >seq2204228 Length=211400 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| || ||| | || |||||| || | | || ||||| || ||||| || ||| Sbjct 60695 GATAAGGAGGGTATTCCTCCAGATCAGCAGCGCTTAATATTTGCTGGAAAACAGCTAGAA 60636 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| |||| | || ||||| ||||||||||||||||| ||||||||| |||| || Sbjct 60635 GATGGGCGAACTCTAGCAGATTATAATATTCAGAAGGAATCAACTCTTCACTTGGTTTTG 60576 Query 29175 CGATTACGAGGAGG 29188 || ||| | ||||| Sbjct 60575 CGGTTAAGGGGAGG 60562 >seq2297319 Length=28675 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || ||| | |||||||| || |||||||| |||||| | ||| | || || Sbjct 20052 AGATCAGCAGAGATTGATCTTTGCTGGGAAACAACTCGAAGATGGAAGGACTCTTGCAGA 20111 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCAC 29165 |||||||||||||||||||||||| || ||| Sbjct 20112 TTACAATATTCAGAAGGAATCTACCCTCCAC 20142 >seq2052140 Length=98983 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| |||| || | |||||||| ||||| || ||| ||| | | Sbjct 16642 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACTCTGGAAGTCGAAAGCTC 16583 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| |||||| || || ||||| | || || || Sbjct 16582 TGACACAATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGACCA 16523 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || || ||||| || ||||| || ||||| ||| | ||||||||||| Sbjct 16522 GCAGAGGCTGATATTTGCCGGAAAACAGCTCGAAGACGGACGCACTCTTGCCGATTACAA 16463 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||| ||||||||||| ||||||||| | || | || | |||||||| Sbjct 16462 TATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTCAGAGGAGGG 16414 >seq1180450 Length=1488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || | | || ||||| || ||||| || |||||| |||| | || || Sbjct 1356 AGATCAGCAGCGCTTAATATTTGCAGGAAAACAGCTAGAAGATAGGCGAACTCTAGCAGA 1415 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||||||||||||||| ||||||||| |||| || || ||| | ||||| Sbjct 1416 TTATAATATTCAGAAGGAATCAACTCTTCACTTGGTTTTGCGGTTAAGGGGAGG 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412501012663910