Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1906877 86.0 5e-12 seq1860899 86.0 5e-12 >seq1906877 Length=16002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| ||| | ||| |||||| || | || ||||| | | Sbjct 14744 CCACCACGAAGACGGAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGCC 14685 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||| ||| || || |||||||||| | ||| || || | || Sbjct 14684 AGAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 14625 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || |||| | || || | ||| ||||| | ||| || Sbjct 14624 ATCCCCTCTTTATCCTGGATCTTAGCCTTCACGTTATCAATGGTGTCTGAACTCTCCACC 14565 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || || ||||||||||| |||||||| Sbjct 14564 TCCAAGGTAATAGTTTTCCCCGTCAGCGTTTTCACAAAGATTTGCAT 14518 >seq1860899 Length=57535 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| ||| | ||| |||||| || | || ||||| | | Sbjct 12999 CCACCACGAAGACGGAGCACCAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGCC 12940 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||| ||| || || |||||||||| | ||| || || | || Sbjct 12939 AGAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 12880 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || |||| | || || | ||| ||||| | ||| || Sbjct 12879 ATCCCCTCTTTATCCTGGATCTTAGCCTTCACGTTATCAATGGTGTCTGAACTCTCCACC 12820 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || || ||||||||||| |||||||| Sbjct 12819 TCCAAGGTAATAGTTTTCCCCGTCAGCGTTTTCACAAAGATTTGCAT 12773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 367270895276676