Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq2990797 113 4e-20 seq2886078 113 4e-20 seq2052140 95.1 1e-14 seq1835634 93.3 3e-14 seq2212270 91.5 1e-13 >seq2990797 Length=389299 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| |||||| |||| |||||||| || || ||||| || | | Sbjct 336582 ATGCAGATATTTGTGAAAACGTTGACGGGCAAAACGATCACTCTGGAAGTTGAGAGCTCC 336641 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 336642 GATACTATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 336701 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| || || || |||| ||| |||| | |||||||| ||| Sbjct 336702 CAGAGGCTGATATTTGCTGGTAAGCAGCTGGAGGATGGGCGAACTCTCGCCGATTACAAT 336761 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || |||||||| || | || ||||||||||| ||||| Sbjct 336762 ATCCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGG 336808 >seq2886078 Length=74263 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| |||||| |||| |||||||| || || ||||| || | | Sbjct 36856 ATGCAGATATTTGTGAAAACGTTGACGGGCAAAACGATCACTCTGGAAGTTGAGAGCTCC 36915 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 36916 GATACTATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 36975 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| || || || |||| ||| |||| | |||||||| ||| Sbjct 36976 CAGAGGCTGATATTTGCTGGTAAGCAGCTGGAGGATGGGCGAACTCTCGCCGATTACAAT 37035 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || |||||||| || | || ||||||||||| ||||| Sbjct 37036 ATCCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGG 37082 >seq2052140 Length=98983 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || ||| |||| ||||| ||||| || |||| || | Sbjct 16185 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCT 16126 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || ||| ||| ||||| ||||| |||| ||||| Sbjct 16125 GATACAATTGATAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 16066 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||| ||||| || |||| ||| |||| ||||||||||||| Sbjct 16065 CAGAGGCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGGCGAACTCTGGCCGATTATAAC 16006 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || || | || |||||||| |||||||| Sbjct 16005 ATTCAGAAGGAGTCCACCCTCCACCTTGTCTTGCGTCTACGCGGTGG 15959 >seq1835634 Length=113921 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| ||||| |||| |||||||||||||| |||| || ||| ||||| ||||| Sbjct 54412 GACAAGGAAGGTATTCCTCCTGATCAACAAAGGCTCATTTTTGTGGGAAAACAGTTGGAG 54471 Query 111340 GAT-TCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 ||| || || || | ||||||||||| || || || |||||||| || || | || || Sbjct 54472 GATGGCTGAACCT-TCGCCGATTATAACATTCATAAGGAATCTACCCTTCACCTTGTCTT 54530 Query 111399 GCGTCTGCGCGGTGG 111413 | |||||| ||||| Sbjct 54531 GTGTCTGCATGGTGG 54545 >seq2212270 Length=153909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || ||| |||| ||||| || || || |||| || | Sbjct 143728 ATGCAGATATTTGTAAAGACGTTGACAGGCAAGACGATCACTCTGGAGGTTGAGAGCTCT 143787 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 143788 GATACGATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 143847 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| ||||| || |||| ||| |||| | |||||||| || Sbjct 143848 CAGAGGCTCATATTTGCTGGCAAGCAGCTGGAGGATGGGCGAACTCTTGCCGATTACAAC 143907 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || || || |||||||| || | || ||||||||||| |||||| Sbjct 143908 ATCCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGGC 143955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || ||| |||| ||||| || || || |||| || | Sbjct 148393 ATGCAGATATTTGTAAAGACGTTGACAGGCAAGACGATCACTCTGGAGGTTGAGAGCTCT 148452 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 148453 GATACGATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 148512 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| ||||| || |||| ||| |||| | |||||||| || Sbjct 148513 CAGAGGCTCATATTTGCTGGCAAGCAGCTGGAGGATGGGCGAACTCTTGCCGATTACAAC 148572 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || || || |||||||| || | || ||||||||||| |||||| Sbjct 148573 ATCCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGGC 148620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407400798432400