Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq2065080 131 3e-25 seq428286 96.9 6e-15 seq1898082 95.1 2e-14 >seq2065080 Length=53610 Score = 131 bits (144), Expect = 3e-25 Identities = 282/421 (67%), Gaps = 2/421 (0%) Strand=Plus/Plus Query 208517 TTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTGATGAT 208576 || ||||| || || || ||||| | | ||||||| || ||||| | || || Sbjct 22658 TTGGTTATTTATAATATCTTCAAATATTAATGAAGGATTATTTGTTATGTTTCGAATTAT 22717 Query 208577 GTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTC 208636 |||||||| ||| || || |||||||| || ||| || ||| ||||||||| Sbjct 22718 ATGAGTATAAGATCGAGAATGTATAGTTTCAGAAAATGACCAAGTTTCAATCCATGTTTC 22777 Query 208637 CAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTGGATAGA 208696 | || || || || | || | || || | ||||||| | || || || || Sbjct 22778 TAATTCAGGTATTGATACAACAGGCAAAAAAGCTATATTTGGACTTCTTCCTTGAATTGA 22837 Query 208697 GTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAA 208756 || |||| || |||||||| | ||||| | || | |||||| || || | ||| || Sbjct 22838 ATCTAGTAAGGTTTGATATTTTAAATTACTTAAAAAAATGTGTTTTTCATGTTTTGGCAA 22897 Query 208757 AGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGA 208816 | | | || || || || || | ||||| ||||||||| | ||| || ||||| Sbjct 22898 ATTGTTAAAATCTATTCGATCTTTAGATAAATCTATTTCTTCAGGTCTCCAAAAAAAAGA 22957 Query 208817 AAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAAC 208876 ||||||||| || || | ||| ||||| || ||| || ||||| || || | |||| Sbjct 22958 AAGTTGTTTTTCTATTAATTTTTCAAAAATTATATATTTTTGTTGATCATATCTGGAAAT 23017 Query 208877 GTTGACGTTTTGACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTTGGTTGAA 208936 || || ||| || | ||||| ||||||| || |||| ||||| |||| ||||| Sbjct 23018 ATTAACTGGTTGTCCAAAAAACATTGGTTCTTGCAAAGGATCATTTTTTTTTT--TTGAA 23075 Query 208937 A 208937 | Sbjct 23076 A 23076 >seq428286 Length=1058 Score = 96.9 bits (106), Expect = 6e-15 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 16836 GACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTAC 16895 ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 861 GACTGGGCTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTAC 920 Query 16896 A 16896 | Sbjct 921 A 921 >seq1898082 Length=53401 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 16121 TGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC 16180 ||| |||| ||||||||| |||||||||||| | ||||||||||||| ||||||||||| Sbjct 33833 TGGTGCGCTTTACAGGATTTGAACCTGTGACCTACAGCTTAGAAGGCTGCTGCTCTATCC 33774 Query 16181 -ACTGAGCTAAGAGCGC 16196 |||||||||| ||||| Sbjct 33773 AACTGAGCTAAAAGCGC 33757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 876548866405040