Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12]
3,033,322 sequences; 24,633,077,211 total letters
Query= NC_020484.1
Length=147284
Score E
Sequences producing significant alignments: (Bits) Value
seq2065080 116 3e-21
>seq2065080
Length=53610
Score = 116 bits (128), Expect = 3e-21
Identities = 625/979 (64%), Gaps = 40/979 (4%)
Strand=Plus/Minus
Query 119718 GTACAAGATAGAAGTTCAGGAGATATATTTGAAACACCACAATTCATGTATATGTTAATC 119777
|| ||| |||| | ||||| | |||| |||| || ||||| | ||||| | ||
Sbjct 24953 GTTCAAAATAGGGTTACAGGAAAAATATACGAAAGTCCTCAATTTTTATATATTCTTATT 24894
Query 119778 TCTGCTACATTATTCAGAAATTACTCAAAAGAAAAAAGGATGAG-TTATGTTAAAAAATA 119836
|| || ||||| || || || | |||| || || || |||| |||||||||
Sbjct 24893 TCAGCATGTTTATTTTCGAAGTATTCTCATAAAAATAG-ATTAGATTATATTAAAAAATT 24835
Query 119837 TTATAACGCAATATCAACCC--ACCTTATCAACATTCCTACTCCGGTCATGGCAGGTGTT 119894
|||| |||| || || || | |||| | || || ||| | |||||||||||
Sbjct 24834 TTATGACGCTATTTCTACTTTTAGAATATCTCTA--CCAACACCGATTATGGCAGGTGTA 24777
Query 119895 AGGACTCCTATTCGCCAGTAT-GCTAGTTGTGTCCTTGTGGATGTTGATGATACTTTACC 119953
|| ||||||| | | || | | ||| |||||| | | || || ||||| ||||
Sbjct 24776 AGAACTCCTACTAGGCAATTTAGCTC-TTGTGTTTTAATTGAATGTGCTGATAATTTAGA 24718
Query 119954 TAGTATCTTCTCTAGCGATATGGCTATTGGGTCATATGTTGCTCAAAGGGCTGGCATTGG 120013
| ||| | | | || | || | |||||| ||||||| || || |||||
Sbjct 24717 TTCTATTAATGCAACAGCTAGTTCAATAGTAAAATATGTATCTCAAAGAGCAGGAATTGG 24658
Query 120014 TATCAATGCTGGCAGAATTAGGGGAATTAATAGTCGTATCCGTGGCGGAGAAGTTCAACA 120073
|| |||| || |||| | | | |||| ||| | || || |||| ||
Sbjct 24657 AATTAATGTAGGGCAAATTCGTGCTGTCGGAAGTCCTATTAGAGGAGGGGAAGCATTTCA 24598
Query 120074 TACCGGCGTTGTCCCATTTCTTAAAA-AGTTTGAGGCAACGGTCAAGTGTTGTACACAAA 120132
||| || | | || ||||| ||| | ||| | | | || || | || | |||
Sbjct 24597 TACTGGTTGTATACC-TTTCTACAAACATTTTCAAACTGCTGTTAAATCCTGCTCTCAAG 24539
Query 120133 ACGGTGTTAGAGGCGGTTCAGCAACTGTACACTTTCCTATTTGGCACCAAGAAATAGAAG 120192
|| |||||||| ||| | || ||| | | |||||||||||| |||| ||||
Sbjct 24538 GTGGAGTTAGAGGAGGTGCTGCTACTCTGTTTTATCCTATTTGGCATTTAGAAGTAGAGA 24479
Query 120193 ATATACTTGTTTTAAAAAACAATAAAGGTACGGAAGATAATAGAGTTAGAAAATTAGATT 120252
|| | | ||||||||||| |||| ||| | ||||||||| |||| ||| | ||||||
Sbjct 24478 ATTTGTTAGTTTTAAAAAATAATAGAGGAATAGAAGATAATCGAGTAAGACATGTAGATT 24419
Query 120253 ACTCTATACAATTATCAAAATTATTTTACGAAAGA--TTTATTAAGAATGAAGATATAAC 120310
|| |||||||| | |||||||| || ||||| |||| |||| || | || |
Sbjct 24418 ACGCTATACAAATTAATAAATTATTATATCAAAGAATGTTATCTAGAA--AAAAAATTAG 24361
Query 120311 TTTATTCTCTCCACATGATGTGCCAGGTTTATATGACGCATTTGGTAAGGA------AGA 120364
|||||| ||| |||||| || |||||||| ||| | || | |
Sbjct 24360 TTTATTTAGTCCTTCTGATGTTCCTTTATTATATGAAAGTTTTTTTTCTGACCAAATAAA 24301
Query 120365 GTTTGACGAATTGTATGCTTCGTATG--AAAGAAAAACATCTATAAAGAAAAAGAAAGTC 120422
||||| ||| | |||| |||| ||||| ||| | | |||| ||||||||| |
Sbjct 24300 ATTTGAAGAACTATATGTAAAATATGAAAAAGATAAAAAAAT-TAAAAAAAAAGAAA-TT 24243
Query 120423 AACGCACAAGATTTGTTTATGTCAATCTTAAAAGAAAGAGCAGAAACAGGTCGTATCTAT 120482
|| | |||||| ||| | | | | |||| ||| | ||||| | ||||||
Sbjct 24242 AAGTCCATAGATTTATTTTCTTTATTGATGCAAGAGAGAACTTCTACAGGAAGAATCTAT 24183
Query 120483 ATTATGAACATTGACCATGTTAATACTCATTCATCTTTT-----AAAGATA-----AAGT 120532
|| || | || ||| |||||||||| |||||| ||| ||| |
Sbjct 24182 ATACAAAATGTAGATCATTGTAATACTCATAGTTCTTTTGATCCAAAAATAGCTCCTATC 24123
Query 120533 AAACATGTCTAATCTATGCCAAGAGATTACATTACCAACAGAACCTATTA-GTCACATTG 120591
| ||| |||||| |||| | || || || ||||| || |||| |||| | | |||
Sbjct 24122 AGACA-ATCTAATTTATGTCTGGAAATAACTTTACCTACTAAACC-ATTATCTAATATTT 24065
Query 120592 ACGGTGAA---GGTGAGATTGCATTGTGTATTCTATCTGCTATCAATATGGGTGCAATTA 120648
| | || || || || ||||| |||| |||||||||| | ||| | || ||| |
Sbjct 24064 TAGATAAAAATGGAGAAATAGCATTATGTACTCTATCTGCTTTAAATTTAGGAAAAATAA 24005
Query 120649 ATGATAAAGAAGAATTAGA 120667
| ||| ||||||||||
Sbjct 24004 AAAATATTAAAGAATTAGA 23986
Score = 100 bits (110), Expect = 3e-16
Identities = 196/282 (70%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 122772 AACAACCAATGTTTTTTGGAGAGGACAATTCAGTA--CAAAGATATGATACATTTAAGTA 122829
|| ||||||||||||||||| | || | | | || ||||||||| | || ||
Sbjct 23049 AAGAACCAATGTTTTTTGGACA--ACCAGTTAATATTTCCAGATATGATCAACAAAAATA 22992
Query 122830 TCCTGTGTTTGATAAATTAACACAACATCAATTAGGTTTGTTTTGGCGACCAGAAGAAAT 122889
| | ||||| ||||||| | || | ||| | ||| |||||| |||| ||||||||
Sbjct 22991 TATAATTTTTGAAAAATTAATAGAAAAACAACTTTCTTTTTTTTGGAGACCTGAAGAAAT 22932
Query 122890 ATCTTTACAAAAAGATAGAAACGATTGGCAACAATTACGACCAGAAC---AAAAACATAT 122946
| |||| |||||| ||| |||| ||||||| ||| ||| ||||||| ||
Sbjct 22931 AGATTTATCTAAAGATCGAATAGATT-TTAACAATT--TGCCAAAACATGAAAAACACAT 22875
Query 122947 CTTTACATCTAATCTAAGATATCAAACATTATTAGATAGTGTACAAGGTAGAGGACCTAG 123006
||| | |||| ||| ||||||||| ||| ||||| | ||||| ||| | || |
Sbjct 22874 TTTTTTAAGTAATTTAAAATATCAAACCTTACTAGATTCAATTCAAGGAAGAAGTCCAAA 22815
Query 123007 TTTATCTTTCTTACCATTTTGTA-GTTTACCTGAAATAGAAA 123047
| || |||| || || | ||||| |||||||| ||||||
Sbjct 22814 TATAGCTTTTTTGCC-TGTTGTATCAATACCTGAATTAGAAA 22774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 453315261417280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |