Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_020484.1 Length=147284 Score E Sequences producing significant alignments: (Bits) Value seq2065080 116 3e-21 >seq2065080 Length=53610 Score = 116 bits (128), Expect = 3e-21 Identities = 625/979 (64%), Gaps = 40/979 (4%) Strand=Plus/Minus Query 119718 GTACAAGATAGAAGTTCAGGAGATATATTTGAAACACCACAATTCATGTATATGTTAATC 119777 || ||| |||| | ||||| | |||| |||| || ||||| | ||||| | || Sbjct 24953 GTTCAAAATAGGGTTACAGGAAAAATATACGAAAGTCCTCAATTTTTATATATTCTTATT 24894 Query 119778 TCTGCTACATTATTCAGAAATTACTCAAAAGAAAAAAGGATGAG-TTATGTTAAAAAATA 119836 || || ||||| || || || | |||| || || || |||| ||||||||| Sbjct 24893 TCAGCATGTTTATTTTCGAAGTATTCTCATAAAAATAG-ATTAGATTATATTAAAAAATT 24835 Query 119837 TTATAACGCAATATCAACCC--ACCTTATCAACATTCCTACTCCGGTCATGGCAGGTGTT 119894 |||| |||| || || || | |||| | || || ||| | ||||||||||| Sbjct 24834 TTATGACGCTATTTCTACTTTTAGAATATCTCTA--CCAACACCGATTATGGCAGGTGTA 24777 Query 119895 AGGACTCCTATTCGCCAGTAT-GCTAGTTGTGTCCTTGTGGATGTTGATGATACTTTACC 119953 || ||||||| | | || | | ||| |||||| | | || || ||||| |||| Sbjct 24776 AGAACTCCTACTAGGCAATTTAGCTC-TTGTGTTTTAATTGAATGTGCTGATAATTTAGA 24718 Query 119954 TAGTATCTTCTCTAGCGATATGGCTATTGGGTCATATGTTGCTCAAAGGGCTGGCATTGG 120013 | ||| | | | || | || | |||||| ||||||| || || ||||| Sbjct 24717 TTCTATTAATGCAACAGCTAGTTCAATAGTAAAATATGTATCTCAAAGAGCAGGAATTGG 24658 Query 120014 TATCAATGCTGGCAGAATTAGGGGAATTAATAGTCGTATCCGTGGCGGAGAAGTTCAACA 120073 || |||| || |||| | | | |||| ||| | || || |||| || Sbjct 24657 AATTAATGTAGGGCAAATTCGTGCTGTCGGAAGTCCTATTAGAGGAGGGGAAGCATTTCA 24598 Query 120074 TACCGGCGTTGTCCCATTTCTTAAAA-AGTTTGAGGCAACGGTCAAGTGTTGTACACAAA 120132 ||| || | | || ||||| ||| | ||| | | | || || | || | ||| Sbjct 24597 TACTGGTTGTATACC-TTTCTACAAACATTTTCAAACTGCTGTTAAATCCTGCTCTCAAG 24539 Query 120133 ACGGTGTTAGAGGCGGTTCAGCAACTGTACACTTTCCTATTTGGCACCAAGAAATAGAAG 120192 || |||||||| ||| | || ||| | | |||||||||||| |||| |||| Sbjct 24538 GTGGAGTTAGAGGAGGTGCTGCTACTCTGTTTTATCCTATTTGGCATTTAGAAGTAGAGA 24479 Query 120193 ATATACTTGTTTTAAAAAACAATAAAGGTACGGAAGATAATAGAGTTAGAAAATTAGATT 120252 || | | ||||||||||| |||| ||| | ||||||||| |||| ||| | |||||| Sbjct 24478 ATTTGTTAGTTTTAAAAAATAATAGAGGAATAGAAGATAATCGAGTAAGACATGTAGATT 24419 Query 120253 ACTCTATACAATTATCAAAATTATTTTACGAAAGA--TTTATTAAGAATGAAGATATAAC 120310 || |||||||| | |||||||| || ||||| |||| |||| || | || | Sbjct 24418 ACGCTATACAAATTAATAAATTATTATATCAAAGAATGTTATCTAGAA--AAAAAATTAG 24361 Query 120311 TTTATTCTCTCCACATGATGTGCCAGGTTTATATGACGCATTTGGTAAGGA------AGA 120364 |||||| ||| |||||| || |||||||| ||| | || | | Sbjct 24360 TTTATTTAGTCCTTCTGATGTTCCTTTATTATATGAAAGTTTTTTTTCTGACCAAATAAA 24301 Query 120365 GTTTGACGAATTGTATGCTTCGTATG--AAAGAAAAACATCTATAAAGAAAAAGAAAGTC 120422 ||||| ||| | |||| |||| ||||| ||| | | |||| ||||||||| | Sbjct 24300 ATTTGAAGAACTATATGTAAAATATGAAAAAGATAAAAAAAT-TAAAAAAAAAGAAA-TT 24243 Query 120423 AACGCACAAGATTTGTTTATGTCAATCTTAAAAGAAAGAGCAGAAACAGGTCGTATCTAT 120482 || | |||||| ||| | | | | |||| ||| | ||||| | |||||| Sbjct 24242 AAGTCCATAGATTTATTTTCTTTATTGATGCAAGAGAGAACTTCTACAGGAAGAATCTAT 24183 Query 120483 ATTATGAACATTGACCATGTTAATACTCATTCATCTTTT-----AAAGATA-----AAGT 120532 || || | || ||| |||||||||| |||||| ||| ||| | Sbjct 24182 ATACAAAATGTAGATCATTGTAATACTCATAGTTCTTTTGATCCAAAAATAGCTCCTATC 24123 Query 120533 AAACATGTCTAATCTATGCCAAGAGATTACATTACCAACAGAACCTATTA-GTCACATTG 120591 | ||| |||||| |||| | || || || ||||| || |||| |||| | | ||| Sbjct 24122 AGACA-ATCTAATTTATGTCTGGAAATAACTTTACCTACTAAACC-ATTATCTAATATTT 24065 Query 120592 ACGGTGAA---GGTGAGATTGCATTGTGTATTCTATCTGCTATCAATATGGGTGCAATTA 120648 | | || || || || ||||| |||| |||||||||| | ||| | || ||| | Sbjct 24064 TAGATAAAAATGGAGAAATAGCATTATGTACTCTATCTGCTTTAAATTTAGGAAAAATAA 24005 Query 120649 ATGATAAAGAAGAATTAGA 120667 | ||| |||||||||| Sbjct 24004 AAAATATTAAAGAATTAGA 23986 Score = 100 bits (110), Expect = 3e-16 Identities = 196/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 122772 AACAACCAATGTTTTTTGGAGAGGACAATTCAGTA--CAAAGATATGATACATTTAAGTA 122829 || ||||||||||||||||| | || | | | || ||||||||| | || || Sbjct 23049 AAGAACCAATGTTTTTTGGACA--ACCAGTTAATATTTCCAGATATGATCAACAAAAATA 22992 Query 122830 TCCTGTGTTTGATAAATTAACACAACATCAATTAGGTTTGTTTTGGCGACCAGAAGAAAT 122889 | | ||||| ||||||| | || | ||| | ||| |||||| |||| |||||||| Sbjct 22991 TATAATTTTTGAAAAATTAATAGAAAAACAACTTTCTTTTTTTTGGAGACCTGAAGAAAT 22932 Query 122890 ATCTTTACAAAAAGATAGAAACGATTGGCAACAATTACGACCAGAAC---AAAAACATAT 122946 | |||| |||||| ||| |||| ||||||| ||| ||| ||||||| || Sbjct 22931 AGATTTATCTAAAGATCGAATAGATT-TTAACAATT--TGCCAAAACATGAAAAACACAT 22875 Query 122947 CTTTACATCTAATCTAAGATATCAAACATTATTAGATAGTGTACAAGGTAGAGGACCTAG 123006 ||| | |||| ||| ||||||||| ||| ||||| | ||||| ||| | || | Sbjct 22874 TTTTTTAAGTAATTTAAAATATCAAACCTTACTAGATTCAATTCAAGGAAGAAGTCCAAA 22815 Query 123007 TTTATCTTTCTTACCATTTTGTA-GTTTACCTGAAATAGAAA 123047 | || |||| || || | ||||| |||||||| |||||| Sbjct 22814 TATAGCTTTTTTGCC-TGTTGTATCAATACCTGAATTAGAAA 22774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453315261417280