Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq1898082 235 2e-56 >seq1898082 Length=53401 Score = 235 bits (260), Expect = 2e-56 Identities = 636/954 (67%), Gaps = 38/954 (4%) Strand=Plus/Minus Query 188629 TTATTAGATAATCATATTATTGGACAAGAAAAAGC--AAAACGTCAATTAGCTGTATCAG 188686 ||| | ||| | || |||| |||||| ||||| | |||| || | || | ||| | | Sbjct 48765 TTACTTGATCAATATGTTATAGGACAAAAAAAAACCAAAAAAGT--ACTATCAGTAGCTG 48708 Query 188687 TTTATAATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggag 188746 ||||||| |||||||| || | ||| | || | || ||| |||||| || Sbjct 48707 TTTATAACCATTATAAACGAAA-AATACA--TACT-AATAATAAAAAAAGTAT------- 48659 Query 188747 taaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTAT 188806 | || | ||||| | ||| | | ||| | || |||||||| || || ||||||| Sbjct 48658 TGAATTTGGAAAAAGC-AATATATTATTAATAGGACCTACTGGAAGTGGAAAGACATTAT 48600 Query 188807 TTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTT 188866 | ||| |||| | ||| | | | |||| ||| | ||||| | ||||| || ||| Sbjct 48599 TAGCTGAAACCCTAGCTAAATTACTTAATGTTCCTTTTGCTATAGCAGATGCTACAACTT 48540 Query 188867 TAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCT-----TCGTTTAAT 188921 |||| ||||||||||||||||| |||||||| |||||| |||| | | |||| Sbjct 48539 TAACTGAAGCTGGTTATGTAGGAGAAGATGTTGAAAAC--ATTGTTCAAAAACTTTTA-- 48484 Query 188922 CCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGT 188981 | || || | ||| || || | ||| ||| || || | ||||| |||||| | Sbjct 48483 CAAAATAG-TAATTTTAATGTCAATGAAGCAGAATTCGGTATAATTTATATAGATGAAAT 48425 Query 188982 AGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGG 189041 ||||||||| ||| ||||||||| | | || ||||| |||||||||| || ||||| Sbjct 48424 TGATAAAATTTCTAAAAAATCAGATAATCCTTCTATTACTAGAGATGTATCAGGTGAAGG 48365 Query 189042 AGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGG 189101 ||| || |||||||| ||||| | || ||||| ||| | || |||| ||| |||| Sbjct 48364 AGTTCAACAAGCTTTGCTAAAATTAATAGAAGGAACAATAGCTTCTATTCCGCCTAAAGG 48305 Query 189102 TGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTAT 189161 ||| | ||||| ||||| |||| | | | ||||||| |||| || |||||||| Sbjct 48304 TGGAAGAAAACATCCTCAAGAAGAGTTTATAAGAGTAGATACTTCTAAAATTTTGTTTAT 48245 Query 189162 TCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTAT---CAAGAGACGCGCTACA-AAAT 189217 ||| ||| | ||| || | ||||| ||||| ||| ||| || || Sbjct 48244 CTGTGGAGGAACATTTTTAGGATTAGAAAAAATTATTTCCAAAAGAATTAAATCAGGAAA 48185 Query 189218 CAACTTTAGGTTTTGATGATAGTGTAGATAAAGTACAAGAAGAAATCAAGGATG-ACAAT 189276 |||| ||||||| ||| || | | | ||| || | || ||| || ||| || | Sbjct 48184 CAAC-ATAGGTTTCAATGCTATTCTTG--AAACTAAATTAAAAAA--AAATATGTACTTT 48130 Query 189277 AAAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTT 189336 || |||| ||| | ||||||| ||||| | |||| | ||| |||||||||||||| Sbjct 48129 GAATTATTACAAAAAATTCAACCTGAAGATTTGATTAAATTTGGACTAATTCCAGAATTT 48070 Query 189337 ATTGGGCGTGTACCAGTAATCGCAACTCTTAACAAACTTGATCGAGATGCATTGATTAAC 189396 | || | |||| || | |||| | | |||| ||| | | |||| | || Sbjct 48069 GTAGGTAGATTACCTATACTAACAACATTAGATGAACTAGATGAAAAATCATTAGTAAAA 48010 Query 189397 ATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAAT-TGTTAGATATGGA 189455 |||||| || || | || || | || |||||||| || | | | || | || || Sbjct 48009 ATTTTAGAGGAACCTAAGAATTCTTTAATAAAACAATA-CAAAGCTCTATTTAAAATAGA 47951 Query 189456 TGGCGTGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGA 189515 || | ||||||| ||| | |||| | || ||| ||| | ||| ||| | Sbjct 47950 GAATGTAACACTAGAATTTGAAACAAAAGCTATCAAAGAAATAGCAAAAAAAGGAATTAA 47891 Query 189516 ACGTAATACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGTTAGA 189569 | | || ||||||||| | || ||| ||| ||| ||||||||||| | ||||| Sbjct 47890 AAGAAAAACTGGTGCTAGAGGTTTAAGATCAATTCTTGAAAATATTTTATTAGA 47837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1530041696758656