Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12]
3,033,322 sequences; 24,633,077,211 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq2062996 122 2e-22
seq2022456 113 1e-19
seq2496046 98.7 2e-15
seq1890751 89.7 1e-12
>seq2062996
Length=51343
Score = 122 bits (134), Expect = 2e-22
Identities = 140/184 (76%), Gaps = 7/184 (4%)
Strand=Plus/Plus
Query 58862 ATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGT-AGATTAAG 58920
||||||||||| | ||| | ||| ||||||| | ||||||||||| ||| || ||||
Sbjct 23060 ATATTAAAAGGTAATCCTATAAAAATATCACTAGAACGTTGATAAATTTGACAGCTTAA- 23118
Query 58921 AGTGTCATCTGCTTC-TACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTT 58979
||| | || || || |||||||||| |||| | ||||||||| || | ||||||||
Sbjct 23119 AGTAT----TGTTTAGTATATAAAATTGAAATAATACATGACAAGGTGGTAATGCCATTT 23174
Query 58980 TATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTT 59039
| | ||| || ||||||||||| ||| | |||||| | | ||||| ||| | |||||
Sbjct 23175 TGTTAATTTCGCTTACATTCCAAGCAGAAACAATAATTCTTCTAGAATTAGGATTATTTT 23234
Query 59040 TAAT 59043
||||
Sbjct 23235 TAAT 23238
>seq2022456
Length=235494
Score = 113 bits (124), Expect = 1e-19
Identities = 138/185 (75%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365
|| ||||||||||| ||| | ||||| |||||| | ||||| || ||||| |||
Sbjct 92244 AGGCATTTGAATGATGGTGACTTTGTTCTTTTCAATCGACAACCTAGTCTTCATAAGATG 92303
Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423
||||| |||| || | ||||| | | | | ||||||||||| || ||| |
Sbjct 92304 TCTATCATGGGGCACAGGATCAAAATCATGCCATACTCAACATTTCGATTGAACTTGTCA 92363
Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483
|| | | | || |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 92364 GT-CACAT-CACCGTATAATGCTGATTTTGATGGAGATGAAATGAATATGCATGTACCCC 92421
Query 305484 AATCA 305488
|||||
Sbjct 92422 AATCA 92426
>seq2496046
Length=189188
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/185 (73%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365
|| ||||||||||| |||| ||||| |||||| | ||||| || || || |||
Sbjct 149599 AGGCATTTGAATGATGGAGATTTTGTTCTTTTCAATCGACAACCTAGTCTTCACAAGATG 149658
Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423
||||| |||| || | ||||| | | | | ||||||||| |||| ||| |
Sbjct 149659 TCTATCATGGGGCACAGGATCAAAATCATGCCATACTCAACATTTCGACTAAACTTGTCA 149718
Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483
|| | | | || |||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 149719 GT-CACATCC-CCATATAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTACCCC 149776
Query 305484 AATCA 305488
| |||
Sbjct 149777 AGTCA 149781
>seq1890751
Length=60812
Score = 89.7 bits (98), Expect = 1e-12
Identities = 117/160 (73%), Gaps = 4/160 (3%)
Strand=Plus/Minus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
||| | || ||| ||||||| || ||||| |||||||| |||| || | | | |||
Sbjct 49116 GTTATTTTTAATCGGCAACCCAGTCTCCATAAGATGTCTATCATGGGGCACAGAATAAAA 49057
Query 305390 GTATTATCTGGATTGACATTTCGATTAAAT--GTAAGTGCTTGTACGCCTTATAATGCGG 305447
|| | | | ||||||||||| ||| || |||| ||||| || || || |
Sbjct 49056 GTGATGCCATACTCAACATTTCGATTGAATTTGTCAGTGACA--ACGCCATACAACGCTG 48999
Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487
|||| ||||||||||| |||||||||||||||||||| ||
Sbjct 48998 ATTTCGATGGAGATGAGATGAATATGCATGTACCTCAGTC 48959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1140687987368442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |