Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2062996 122 2e-22 seq2022456 113 1e-19 seq2496046 98.7 2e-15 seq1890751 89.7 1e-12 >seq2062996 Length=51343 Score = 122 bits (134), Expect = 2e-22 Identities = 140/184 (76%), Gaps = 7/184 (4%) Strand=Plus/Plus Query 58862 ATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGT-AGATTAAG 58920 ||||||||||| | ||| | ||| ||||||| | ||||||||||| ||| || |||| Sbjct 23060 ATATTAAAAGGTAATCCTATAAAAATATCACTAGAACGTTGATAAATTTGACAGCTTAA- 23118 Query 58921 AGTGTCATCTGCTTC-TACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTT 58979 ||| | || || || |||||||||| |||| | ||||||||| || | |||||||| Sbjct 23119 AGTAT----TGTTTAGTATATAAAATTGAAATAATACATGACAAGGTGGTAATGCCATTT 23174 Query 58980 TATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTT 59039 | | ||| || ||||||||||| ||| | |||||| | | ||||| ||| | ||||| Sbjct 23175 TGTTAATTTCGCTTACATTCCAAGCAGAAACAATAATTCTTCTAGAATTAGGATTATTTT 23234 Query 59040 TAAT 59043 |||| Sbjct 23235 TAAT 23238 >seq2022456 Length=235494 Score = 113 bits (124), Expect = 1e-19 Identities = 138/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | ||||| |||||| | ||||| || ||||| ||| Sbjct 92244 AGGCATTTGAATGATGGTGACTTTGTTCTTTTCAATCGACAACCTAGTCTTCATAAGATG 92303 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423 ||||| |||| || | ||||| | | | | ||||||||||| || ||| | Sbjct 92304 TCTATCATGGGGCACAGGATCAAAATCATGCCATACTCAACATTTCGATTGAACTTGTCA 92363 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 92364 GT-CACAT-CACCGTATAATGCTGATTTTGATGGAGATGAAATGAATATGCATGTACCCC 92421 Query 305484 AATCA 305488 ||||| Sbjct 92422 AATCA 92426 >seq2496046 Length=189188 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/185 (73%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| |||| ||||| |||||| | ||||| || || || ||| Sbjct 149599 AGGCATTTGAATGATGGAGATTTTGTTCTTTTCAATCGACAACCTAGTCTTCACAAGATG 149658 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423 ||||| |||| || | ||||| | | | | ||||||||| |||| ||| | Sbjct 149659 TCTATCATGGGGCACAGGATCAAAATCATGCCATACTCAACATTTCGACTAAACTTGTCA 149718 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 149719 GT-CACATCC-CCATATAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTACCCC 149776 Query 305484 AATCA 305488 | ||| Sbjct 149777 AGTCA 149781 >seq1890751 Length=60812 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||| ||||||| || ||||| |||||||| |||| || | | | ||| Sbjct 49116 GTTATTTTTAATCGGCAACCCAGTCTCCATAAGATGTCTATCATGGGGCACAGAATAAAA 49057 Query 305390 GTATTATCTGGATTGACATTTCGATTAAAT--GTAAGTGCTTGTACGCCTTATAATGCGG 305447 || | | | ||||||||||| ||| || |||| ||||| || || || | Sbjct 49056 GTGATGCCATACTCAACATTTCGATTGAATTTGTCAGTGACA--ACGCCATACAACGCTG 48999 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||| ||||||||||| |||||||||||||||||||| || Sbjct 48998 ATTTCGATGGAGATGAGATGAATATGCATGTACCTCAGTC 48959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1140687987368442