Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq2065080 167 5e-36 >seq2065080 Length=53610 Score = 167 bits (184), Expect = 5e-36 Identities = 389/579 (67%), Gaps = 6/579 (1%) Strand=Plus/Minus Query 24223 TATGTTAAAAAGTTTTATGACGCAGTAAGTAATTTTGACATCAGTCTTCCAACACCTATT 24282 ||| ||||||| ||||||||||| | || |||| || ||| |||||||| ||| Sbjct 24848 TATATTAAAAAATTTTATGACGCTATTTCTACTTTTAGAATATCTCTACCAACACCGATT 24789 Query 24283 ATGGCAGGTCTACGTACTAACACACGTCAGTTTAGTTCTTGTGTAGTACT-GAACGTTGG 24341 ||||||||| || | ||| || | || ||||| |||||||| || | ||| || | Sbjct 24788 ATGGCAGGTGTAAGAACTCCTACTAGGCAATTTAGCTCTTGTGTTTTAATTGAATGT-GC 24730 Query 24342 TGATAGTTTAGATAGTATTGGTTCATCAAATCACGCCATTCTACGCTATATCTCACGTAA 24401 ||||| ||||||| |||| | || || | | || || ||| | || | | Sbjct 24729 TGATAATTTAGATTCTATTAATGCAACAGCTAGTTCAATAGTAAAATATGTATCTCAAAG 24670 Query 24402 AGCTGGACTAGGTATTAATATGGGCCGTATTCGTGCTCTAGACTCTGAGATTCGTTCAGG 24461 ||| ||| | || |||||| | || | ||||||||| | | | ||| | ||| Sbjct 24669 AGCAGGAATTGGAATTAATGTAGGGCAAATTCGTGCTGTCGGAAGTCCTATTAGAGGAGG 24610 Query 24462 TGATGCAGTACATACTGGGTTGATTCCTTTTATCGCAGCAACTGCTAAGACC-GTTAAAA 24520 || ||| | |||||||| | || ||||| | | || | | || | |||||| Sbjct 24609 GGAAGCATTTCATACTGGTTGTATACCTTTCTACAAA-CATTTTCAAACTGCTGTTAAAT 24551 Query 24521 GCTGCTCACAGGGTGGTGTGCGTGGTGGTGCAGCAACTGTTCACT-TCCCATTGTGGCAT 24579 |||||| || ||||| || | || ||||| || ||| | | ||| ||| |||||| Sbjct 24550 CCTGCTCTCAAGGTGGAGTTAGAGGAGGTGCTGCTACTCTGTTTTATCCTATT-TGGCAT 24492 Query 24580 TTGGAGTTTGATAACCTAGTAGTACTTAAAAATAACAAAGGTACAGAGTTTAACCGTGTA 24639 || || | || || | |||| | |||||||| | ||| | ||| ||| || ||| Sbjct 24491 TTAGAAGTAGAGAATTTGTTAGTTTTAAAAAATAATAGAGGAATAGAAGATAATCGAGTA 24432 Query 24640 CGTCAACTAGACTATTGTTTCCAAGTAAACAAAACTTTATATCAACGTTTGGTTGATGGA 24699 | || |||| || | | ||| | || ||| ||||||||| | || | | || Sbjct 24431 AGACATGTAGATTACGCTATACAAATTAATAAATTATTATATCAAAGAATGTTATCTAGA 24372 Query 24700 AAGAACATTACATTCTTTAGTCCTAATGAAGTTCCTGGGCTATATGAAGCATTCTGTTCT 24759 || || |||| || ||||||||| ||| |||||| |||||||| || | |||| Sbjct 24371 AAAAAAATTAGTTTATTTAGTCCTTCTGATGTTCCTTTATTATATGAAAGTTTTTTTTCT 24312 Query 24760 GACCAAAAAGAATTTGAAAAACTATATAAAAAATACGAA 24798 ||||||| | |||||||| |||||||| |||||| ||| Sbjct 24311 GACCAAATAAAATTTGAAGAACTATATGTAAAATATGAA 24273 Score = 107 bits (118), Expect = 4e-18 Identities = 325/488 (67%), Gaps = 18/488 (4%) Strand=Plus/Minus Query 25371 AGGTATTCTTCCAATTGATACTTATAAATCTGACATTGATGAATTAGTAACTAAAGAACT 25430 |||| | || |||||||||||||||||| ||| |||||| || | || | |||| Sbjct 23697 AGGTTTACTACCAATTGATACTTATAAAAGTGAAATTGAT--ATCA-TATGCGACGAACC 23641 Query 25431 AAAACA---AGATTGGGAATCCTTACGTGAAGA--TATCAAAGAATATGGTATTCGTAAC 25485 | || | | ||||||| ||| | || | ||||||| ||||||| | | ||| Sbjct 23640 ATTGCATTTAAACTGGGAATTTTTAAGAAAAAAAATATCAAA--ATATGGTTTAAGAAAC 23583 Query 25486 GCAACAACAATGGCATTAATGCCAGCAGAAACAAGTGCACAAATCAGTAACAGTACTAAT 25545 | ||| | || | ||||| |||||||| | | ||||| || |||||| Sbjct 23582 TCTACACTATCTGCTATTATGCCTTCAGAAACATCTTCTCAAATATCAAATGCAACTAAT 23523 Query 25546 GGTATTGAAAAGCCACGTTCTCTTGTAACTAAGAAACTATCTAAGGATGGTATTCTTAAA 25605 || || || || | || | | || ||| |||||| |||||||| |||||| Sbjct 23522 GGAATAGAGCCTCCTAGAGGATTTATTAGTATAAAAGCATCTAAAGATGGTATGCTTAAA 23463 Query 25606 CAAGTAGTTCCAGAA-ATCAATAAGTTGAAAAACAAA-TATGATTTACTATGGGATCAGA 25663 ||||| ||||| ||| || || || | |||| |||| ||||| ||| |||||||| Sbjct 23462 CAAGTTGTTCCCGAATATAAAAAACT--AAAATCAAAGTATGAATTATTATGGGATATAC 23405 Query 25664 AAGATAACATTGGTTATCTACAAATCTGTGGTGTTCTACAAAAATACATTGACCAAAGTA 25723 ||||| || || ||||| || | |||| || | ||||||| |||| ||| | Sbjct 23404 CGGATAATATCGGATATCTTAAATTAGTTGGTATTATGCAAAAATTTGTTGATCAATCAA 23345 Query 25724 TCAGTGTTAATACTAGCTATAACCCAATACACTTCCCTGATGGTAAGTTGCCAATGTCAA 25783 | | |||||||| ||| | ||| | | || || ||||| || | || ||| || Sbjct 23344 TTTCTACTAATACTAATTATGATCCATCAAAATTTCCAGATGGAAAAATTCCGATG-AAA 23286 Query 25784 CTCTT-CTAACTGAACTTATGTA-TGCATATAAGGTTGGTTTGAAAAATCTTTATTATCA 25841 | || |||| | | |||| | ||| |||||| | || | |||| | | |||||||| Sbjct 23285 TTATTACTAAAAG-ATTTATTAACTGCTTATAAGTTAGGAATAAAAACTTTATATTATCA 23227 Query 25842 TAATACCA 25849 ||||||| Sbjct 23226 AAATACCA 23219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071830697898818