Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2049698 125 8e-24 seq2002493 107 2e-18 seq1869705 102 9e-17 >seq2049698 Length=133754 Score = 125 bits (138), Expect = 8e-24 Identities = 305/452 (67%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| || | | || ||||||| |||||| | | || || || || Sbjct 11178 ATCAAAACGCCCTGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCAGC 11237 Query 9586 GATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || |||| ||||| || ||| | |||||||||||||| ||||| | ||| || || | Sbjct 11238 AATCACAATGATACCAGTGTTCCCT-TCAAAACCATCCATTTCTGTAAGAAGCTGATTCA 11296 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 |||||||| || |||||||| || | || |||| | | ||| | || || Sbjct 11297 GGGTTTGTTCTCGCTCATCATTTCCTCCACCTA-TTCCAGTTCCTCTCTGCCTACCAACT 11355 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 |||||||| ||||| | ||| || ||||| || |||||| || || || || Sbjct 11356 GCATCAATTTCATCGACGAAAACAATGCAAGGGGCATTTTCTTTGGCCTTTTTGAACAGG 11415 Query 9764 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 || || ||| || | || || | ||| ||||||||||| ||||| | | | | | Sbjct 11416 TCACG--CACTCTAGATGCTCCGATACCGACAAACATCTCAACAAACTCAGACCCTG-AG 11472 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || | || |||||| ||| || ||| || |||||||| ||| || | |||||| || Sbjct 11473 ATAGAGAAGAAGGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTTCCCA 11532 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9940 || ||||| |||| | || || | ||| ||||| || ||| || || | Sbjct 11533 GTCCCTGGTGGACCCACAAGAAGAACTCCTTTAGGAATACGAGCTCCAATTGCAGTAAAC 11592 Query 9941 CTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||||| |||| ||| || || || || | ||| Sbjct 11593 CTCTCTGGTTTCTTCAGGAACTCAACCACTTC 11624 >seq2002493 Length=19711 Score = 107 bits (118), Expect = 2e-18 Identities = 248/366 (68%), Gaps = 17/366 (5%) Strand=Plus/Plus Query 7283 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTG 7340 || || |||||| | || |||||| ||||| | ||| || | ||||| ||| ||| Sbjct 12365 CCCCAGAACGAGAACACCCCCTTCCACCCAAGAA--GTCCTTATGCTGTCTCCAAGCTTG 12422 Query 7341 CGGCACATTGGC--TC-GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCG 7397 | || |||||| || ||||| ||| | ||| | || ||| ||||||| ||| | Sbjct 12423 CAGCCCATTGGTATTCTGTCAAC---TACAGAGAGGCATATGGAATGTTTGCCTGCAATG 12479 Query 7398 GAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTA 7457 | |||||||||||||| || || || || |||||| |||||||||||| |||||| | Sbjct 12480 GGATCCTCTTCAACCACGAGTCCCCAAGGAGAGGTGAGAACTTTGTCACAAGGAAGATCA 12539 Query 7458 CCGAGGGTATCAAACAAATCATGAAGGG---TGAAAAGGAGTTCATTGAATTGGGTAACA 7514 || || | | ||||| | || | | ||| || | | ||||| || Sbjct 12540 CCAGGGCTGTGGGGAGAATCAAAATTGGGCTTCAGAAGAAG---CTGTATTTGGGCAATC 12596 Query 7515 TAAACGCGGCGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGC 7574 | || || | || |||||||| || ||||||||| || || |||||| | ||| Sbjct 12597 TCAAGGCCTCCAGGGATTGGGGATTTGCTGGGGACTATGTGGAGGCAATGTGGTTGATGG 12656 Query 7575 TTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATACAG-TGAGG 7633 | || ||||| | |||| || ||||| || || || | ||| | |||||| | ||||| Sbjct 12657 TGCAGCAAGATAAGCCCGATGACTATGTTGTTGCCACTGATGATAGCCATACCGTTGAGG 12716 Query 7634 CGGTTC 7639 | ||| Sbjct 12717 AGTTTC 12722 >seq1869705 Length=65823 Score = 102 bits (112), Expect = 9e-17 Identities = 322/485 (66%), Gaps = 18/485 (4%) Strand=Plus/Plus Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || || ||||| | || |||| || | |||||| ||||| || || |||||||||| Sbjct 20105 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTAGCTGCGATGACAATC 20164 Query 9596 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9654 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 20165 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 20223 Query 9655 CCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAAT 9711 ||||||||||| || |||| || || | | ||| ||||||| ||||| | Sbjct 20224 TCGTTCATCATTGCCT---CCACCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCGAG 20280 Query 9712 CTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTA 9770 ||||| ||||| | || || ||| |||||| | | ||| ||| ||||| || | Sbjct 20281 TTCATCTATGAAAATAATACAAGGTGCATTTTCCTTTGCCCTCTTGAAA-AGATCACGAA 20339 Query 9771 CACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATG 9829 | | ||| || || || ||||||||||| | ||| | | | ||| || | | | Sbjct 20340 CCCTAGAGGCTCCTACTCCTACAAACATCTCTATAAATTCAGACCCAGAA-ATAGAAAAG 20398 Query 9830 AAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 |||||||| | |||||| || || |||| || | | || || || || || || Sbjct 20399 AAGGGGACCCCCGCTTCACCAGCGATTGCTCTTGCCAACAATGTTTTTCCAGTTCCAGGA 20458 Query 9890 TTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG---CCACTTCCAAAGTATCTCTCA 9946 ||| | | | | | || | ||| | || ||| |||| | || | || |||| Sbjct 20459 GGACCTACCAACAAGAC-CCCCTTGGGA-ATTCGCGCTCCCAC-TGCAGTGAATTTCTCT 20515 Query 9947 GGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCA 10006 |||| ||| | ||| ||||| ||||| | || || | |||||| | || | || || Sbjct 20516 GGTTTCTTCAAAAATTCCACTATTTCCTTGAAATCTTGTTTGGCTTCTTCTACACCAGCA 20575 Query 10007 ACATC 10011 ||||| Sbjct 20576 ACATC 20580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561145577295280