Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12]
3,033,322 sequences; 24,633,077,211 total letters
Query= NC_028773.1
Length=182145
Score E
Sequences producing significant alignments: (Bits) Value
seq2065080 145 9e-30
>seq2065080
Length=53610
Score = 145 bits (160), Expect = 9e-30
Identities = 276/405 (68%), Gaps = 6/405 (1%)
Strand=Plus/Minus
Query 18310 CCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCT---GTGTT 18366
||||| || ||||||||||| || | || || || | || || |||| |||||
Sbjct 24800 CCAACACCGATTATGGCAGGTGTAAGAACTCCTACTAGGCAATTT---AGCTCTTGTGTT 24744
Query 18367 AAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAAT 18426
|||||| | ||| | | || || ||||| | | |||| || | |||||
Sbjct 24743 TTAATTGAATGTGCTGATAATTTAGATTCTATTAATGCAACAGCTAGTTCAATAGTAAAA 24684
Query 18427 TATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGT 18486
||| | | || | || || || || ||||| | || | ||||||||| | ||||||
Sbjct 24683 TATGTATCTCAAAGAGCAGGAATTGGAATTAATGTAGGGCAAATTCGTGCTGTCGGAAGT 24624
Query 18487 CAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAG 18546
| || | || |||| || |||||| ||| || |||| |||||||| ||
Sbjct 24623 CCTATTAGAGGAGGGGAAGCATTTCATACTGGTTGTATACCTTTCTACAAACATTTTCAA 24564
Query 18547 ACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTAT 18606
|||||||||||||| || || ||||| || ||| | || ||||| || ||||||| ||||
Sbjct 24563 ACTGCTGTTAAATCCTGCTCTCAAGGTGGAGTTAGAGGAGGTGCTGCTACTCTGTTTTAT 24504
Query 18607 CCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGAT 18666
||||| |||||| | ||| | || || || | ||| | |||||||| | ||| | ||
Sbjct 24503 CCTATTTGGCATTTAGAAGTAGAGAATTTGTTAGTTTTAAAAAATAATAGAGGAATAGAA 24444
Query 18667 GAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAA 18711
|| || || | | || | ||||| | | ||||||| ||||||
Sbjct 24443 GATAATCGAGTAAGACATGTAGATTACGCTATACAAATTAATAAA 24399
Score = 93.3 bits (102), Expect = 5e-14
Identities = 199/295 (67%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 20082 CAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCT 20141
|| ||| || ||| || ||||| ||||| ||||| || | ||| || ||| | |||
Sbjct 22999 CAAAAATATATAATTTTTGAAAAATTAATAGAAAAACAACTTTCTTTTTTTTGGAGACCT 22940
Query 20142 GAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAA 20201
||||| | || || || ||| || |||| | | ||||| ||| |||||||||||
Sbjct 22939 GAAGAAATAGATTTATCTAAAGATCGAATAGATTTTAACAATTTGCCAAAACATGAAAAA 22880
Query 20202 CATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGCT 20261
|| || ||| ||||| || ||||| | |||||| ||| | |||| ||| | |
Sbjct 22879 CACATTTTTTTAAGTAATTTAAAATATCAAACCTTACTAGATTCAATTCAAGGAAGAAGT 22820
Query 20262 CCTAACACTGCTTTTATGTCCATCGTATC-TGATGTAACACTTGACACATGGATTCCTAC 20320
|| || | |||||| || | | ||||| | | | | | || ||||||||| ||
Sbjct 22819 CCAAATATAGCTTTTTTGCCTGTTGTATCAATACCTGA-ATTAGAAACATGGATTGAAAC 22761
Query 20321 CTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAAC 20375
||| | || || || || || || ||| |||||||| || || || || |||
Sbjct 22760 TTGGTCATTTTCTGAAACTATACATTCTCGATCTTATACTCATATAATTCGAAAC 22706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560640675887600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |