Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq2065080 145 9e-30 >seq2065080 Length=53610 Score = 145 bits (160), Expect = 9e-30 Identities = 276/405 (68%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 18310 CCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCT---GTGTT 18366 ||||| || ||||||||||| || | || || || | || || |||| ||||| Sbjct 24800 CCAACACCGATTATGGCAGGTGTAAGAACTCCTACTAGGCAATTT---AGCTCTTGTGTT 24744 Query 18367 AAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAAT 18426 |||||| | ||| | | || || ||||| | | |||| || | ||||| Sbjct 24743 TTAATTGAATGTGCTGATAATTTAGATTCTATTAATGCAACAGCTAGTTCAATAGTAAAA 24684 Query 18427 TATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGT 18486 ||| | | || | || || || || ||||| | || | ||||||||| | |||||| Sbjct 24683 TATGTATCTCAAAGAGCAGGAATTGGAATTAATGTAGGGCAAATTCGTGCTGTCGGAAGT 24624 Query 18487 CAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAG 18546 | || | || |||| || |||||| ||| || |||| |||||||| || Sbjct 24623 CCTATTAGAGGAGGGGAAGCATTTCATACTGGTTGTATACCTTTCTACAAACATTTTCAA 24564 Query 18547 ACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTAT 18606 |||||||||||||| || || ||||| || ||| | || ||||| || ||||||| |||| Sbjct 24563 ACTGCTGTTAAATCCTGCTCTCAAGGTGGAGTTAGAGGAGGTGCTGCTACTCTGTTTTAT 24504 Query 18607 CCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGAT 18666 ||||| |||||| | ||| | || || || | ||| | |||||||| | ||| | || Sbjct 24503 CCTATTTGGCATTTAGAAGTAGAGAATTTGTTAGTTTTAAAAAATAATAGAGGAATAGAA 24444 Query 18667 GAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAA 18711 || || || | | || | ||||| | | ||||||| |||||| Sbjct 24443 GATAATCGAGTAAGACATGTAGATTACGCTATACAAATTAATAAA 24399 Score = 93.3 bits (102), Expect = 5e-14 Identities = 199/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 20082 CAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCT 20141 || ||| || ||| || ||||| ||||| ||||| || | ||| || ||| | ||| Sbjct 22999 CAAAAATATATAATTTTTGAAAAATTAATAGAAAAACAACTTTCTTTTTTTTGGAGACCT 22940 Query 20142 GAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAA 20201 ||||| | || || || ||| || |||| | | ||||| ||| ||||||||||| Sbjct 22939 GAAGAAATAGATTTATCTAAAGATCGAATAGATTTTAACAATTTGCCAAAACATGAAAAA 22880 Query 20202 CATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGCT 20261 || || ||| ||||| || ||||| | |||||| ||| | |||| ||| | | Sbjct 22879 CACATTTTTTTAAGTAATTTAAAATATCAAACCTTACTAGATTCAATTCAAGGAAGAAGT 22820 Query 20262 CCTAACACTGCTTTTATGTCCATCGTATC-TGATGTAACACTTGACACATGGATTCCTAC 20320 || || | |||||| || | | ||||| | | | | | || ||||||||| || Sbjct 22819 CCAAATATAGCTTTTTTGCCTGTTGTATCAATACCTGA-ATTAGAAACATGGATTGAAAC 22761 Query 20321 CTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAAC 20375 ||| | || || || || || || ||| |||||||| || || || || ||| Sbjct 22760 TTGGTCATTTTCTGAAACTATACATTCTCGATCTTATACTCATATAATTCGAAAC 22706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560640675887600