Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq2065080 203 3e-47 >seq2065080 Length=53610 Score = 203 bits (224), Expect = 3e-47 Identities = 311/441 (71%), Gaps = 12/441 (3%) Strand=Plus/Plus Query 43561 ATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATT 43620 ||| | ||| | | | ||||| | ||| | | || || ||||||| ||| | ||||| Sbjct 24402 ATTAATTTGTATAGCGTAATCTACATGTCTTACTCGATTATCTTCTATTCCTCTATTATT 24461 Query 43621 TTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 43680 ||| ||||| | | ||| || ||||| |||||||||||||||||| | ||||||||| Sbjct 24462 TTTTAAAACTAACAAATTCTCTACTTCTAAATGCCAAATAGGATAAAACAGAGTAGCAGC 24521 Query 43681 GCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 43740 || || | || ||||||||| ||||| |||||||||||||| ||||||||||| | || Sbjct 24522 ACCTCCTCTAACTCCACCTTGAGAGCAGGATTTAACAGCAGTTTGAAAATGTTTGTAGAA 24581 Query 43741 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCG---GCACG 43797 ||| ||| ||||||||| | |||| || || | ||| || | || ||||| Sbjct 24582 AGGTATACAACCAGTATGAAATGCTTCCCC---TCCTCTAATAGGACTTCCGACAGCACG 24638 Query 43798 AATCATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGA--- 43854 ||| || || ||||| |||||||| || | || || | ||||| || ||||| Sbjct 24639 AATTTGCCCTACATTAATTCCAATTCCTGCTCTTTGAGATACATATTTTACTATTGAACT 24698 Query 43855 AGCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACT 43914 ||| | || ||| ||||| | ||| |||| | ||||| | |||||| || || Sbjct 24699 AGCTGTTGC---ATTAATAGAATCTAAATTATCAGCACATTCAATTAAAACACAAGAGCT 24755 Query 43915 AAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCG 43974 ||| || | ||| ||||| | ||| |||||||| || ||||||| || || Sbjct 24756 AAATTGCCTAGTAGGAGTTCTTACACCTGCCATAATCGGTGTTGGTAGAGATATTCTAAA 24815 Query 43975 AGTAGATACTGCTTCATAAAA 43995 |||||| | || |||||||| Sbjct 24816 AGTAGAAATAGCGTCATAAAA 24836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514931705156960