Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_031085.1 Length=166634 Score E Sequences producing significant alignments: (Bits) Value seq2065080 212 6e-50 seq2062996 86.0 6e-12 >seq2065080 Length=53610 Score = 212 bits (234), Expect = 6e-50 Identities = 313/441 (71%), Gaps = 12/441 (3%) Strand=Plus/Plus Query 140478 ATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATT 140537 ||| | ||| | | | ||||| | ||| | | || || ||||||| ||| | ||||| Sbjct 24402 ATTAATTTGTATAGCGTAATCTACATGTCTTACTCGATTATCTTCTATTCCTCTATTATT 24461 Query 140538 TTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 140597 ||| ||||| | | ||| || ||||| |||||||||||||||||| | ||||||||| Sbjct 24462 TTTTAAAACTAACAAATTCTCTACTTCTAAATGCCAAATAGGATAAAACAGAGTAGCAGC 24521 Query 140598 GCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 140657 || || | || ||||||||| ||||| |||||||||||||| ||||||||||| | || Sbjct 24522 ACCTCCTCTAACTCCACCTTGAGAGCAGGATTTAACAGCAGTTTGAAAATGTTTGTAGAA 24581 Query 140658 AGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTCG---GCACG 140714 ||| ||| |||||||||| | |||| || || | ||| || | || ||||| Sbjct 24582 AGGTATACAACCAGTATGAAATGCTTCCCC---TCCTCTAATAGGACTTCCGACAGCACG 24638 Query 140715 AATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGA--- 140771 ||| || || ||||| |||||||| || | || ||| | ||||| || ||||| Sbjct 24639 AATTTGCCCTACATTAATTCCAATTCCTGCTCTTTGAGATACATATTTTACTATTGAACT 24698 Query 140772 AGCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACT 140831 ||| | || ||| ||||| | ||| |||| | ||||| | |||||| || || Sbjct 24699 AGCTGTTGC---ATTAATAGAATCTAAATTATCAGCACATTCAATTAAAACACAAGAGCT 24755 Query 140832 AAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCG 140891 ||| || | ||| ||||| | ||| |||||||| || ||||||| || || Sbjct 24756 AAATTGCCTAGTAGGAGTTCTTACACCTGCCATAATCGGTGTTGGTAGAGATATTCTAAA 24815 Query 140892 AGTAGATACTGCTTCATAAAA 140912 |||||| | || |||||||| Sbjct 24816 AGTAGAAATAGCGTCATAAAA 24836 >seq2062996 Length=51343 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 142329 GCATATGATGCAATATTAAATGGAAGACCGAGGAAAACATCTACCGAACGTTGATACCAC 142388 ||||| ||| |||||||| || | || | |||| ||| ||||||||||| Sbjct 23048 GCATAGCTTGCTATATTAAAAGGTAATCCTATAAAAATATCACTAGAACGTTGATAAATT 23107 Query 142389 TGA-AGGTCAAGGTATCCATTACGCACATTAAACTGATAGAACATATGACAAGGCGGTAA 142447 ||| || | || |||| ||| | | || ||| ||| | || | ||||||||| ||||| Sbjct 23108 TGACAGCTTAAAGTATTGTTTA-GTATATAAAATTGAAATAATACATGACAAGGTGGTAA 23166 Query 142448 TGCCATATATTTAAGTTCAGCTGGATTCCACGCAGAAACAATTTGACGCCTATCATTTGG 142507 |||||| | |||| ||| | |||||| ||||||||||| | ||| ||| || Sbjct 23167 TGCCATTTTGTTAATTTCGCTTACATTCCAAGCAGAAACAATAATTCTTCTAGAATTAGG 23226 Query 142508 CAGTTTTTTAATACGATCAATAACTTCTATAATTTGATCTA 142548 |||||||| ||| || || | | |||||||||||| Sbjct 23227 ATTATTTTTAATTTCATCTATTACATTTTTAATTTGATCTA 23267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512887470189280