Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20glauca_20[genbank_20GCA_5F000411955.5_202016-01-12] 3,033,322 sequences; 24,633,077,211 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq2990797 116 3e-21 seq2886078 116 3e-21 seq2052140 98.7 8e-16 seq2212270 96.9 3e-15 seq1835634 93.3 3e-14 >seq2990797 Length=389299 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||||||||| |||||||| || || ||||| || | | Sbjct 336582 ATGCAGATATTTGTGAAAACGTTGACGGGCAAAACGATCACTCTGGAAGTTGAGAGCTCC 336641 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 336642 GATACTATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 336701 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||| ||| |||| | |||||||| ||| Sbjct 336702 CAGAGGCTGATATTTGCTGGTAAGCAGCTGGAGGATGGGCGAACTCTCGCCGATTACAAT 336761 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || |||||||| || | || ||||||||||| ||||| Sbjct 336762 ATCCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGG 336808 >seq2886078 Length=74263 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||||||||| |||||||| || || ||||| || | | Sbjct 36856 ATGCAGATATTTGTGAAAACGTTGACGGGCAAAACGATCACTCTGGAAGTTGAGAGCTCC 36915 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 36916 GATACTATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 36975 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||| ||| |||| | |||||||| ||| Sbjct 36976 CAGAGGCTGATATTTGCTGGTAAGCAGCTGGAGGATGGGCGAACTCTCGCCGATTACAAT 37035 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || |||||||| || | || ||||||||||| ||||| Sbjct 37036 ATCCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGG 37082 >seq2052140 Length=98983 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| ||||| || |||| || | Sbjct 16185 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCT 16126 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || ||| ||| ||||| ||||| |||| ||||| Sbjct 16125 GATACAATTGATAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 16066 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| |||| ||| ||||| || |||| ||| |||| ||||||||||||| Sbjct 16065 CAGAGGCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGGCGAACTCTGGCCGATTATAAC 16006 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || || || || || | || |||||||| |||||||| Sbjct 16005 ATTCAGAAGGAGTCCACCCTCCACCTTGTCTTGCGTCTACGCGGTGG 15959 >seq2212270 Length=153909 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| || || || |||| || | Sbjct 143728 ATGCAGATATTTGTAAAGACGTTGACAGGCAAGACGATCACTCTGGAGGTTGAGAGCTCT 143787 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 143788 GATACGATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 143847 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| ||||| || |||| ||| |||| | |||||||| || Sbjct 143848 CAGAGGCTCATATTTGCTGGCAAGCAGCTGGAGGATGGGCGAACTCTTGCCGATTACAAC 143907 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || || |||||||| || | || ||||||||||| |||||| Sbjct 143908 ATCCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGGC 143955 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| || || || |||| || | Sbjct 148393 ATGCAGATATTTGTAAAGACGTTGACAGGCAAGACGATCACTCTGGAGGTTGAGAGCTCT 148452 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 148453 GATACGATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 148512 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| ||||| || |||| ||| |||| | |||||||| || Sbjct 148513 CAGAGGCTCATATTTGCTGGCAAGCAGCTGGAGGATGGGCGAACTCTTGCCGATTACAAC 148572 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || || |||||||| || | || ||||||||||| |||||| Sbjct 148573 ATCCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGGC 148620 >seq1835634 Length=113921 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 ||||| ||||| |||| |||||||||||||| |||| || ||| ||||| ||||| Sbjct 54412 GACAAGGAAGGTATTCCTCCTGATCAACAAAGGCTCATTTTTGTGGGAAAACAGTTGGAG 54471 Query 111253 GAT-TCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111311 ||| || || || | ||||||||||| || || || |||||||| || || | || || Sbjct 54472 GATGGCTGAACCT-TCGCCGATTATAACATTCATAAGGAATCTACCCTTCACCTTGTCTT 54530 Query 111312 GCGTCTGCGCGGTGG 111326 | |||||| ||||| Sbjct 54531 GTGTCTGCATGGTGG 54545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406217425462672