Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq37697 86.0 5e-12 seq352428 84.2 2e-11 seq272785 84.2 2e-11 seq99438 84.2 2e-11 seq74129 84.2 2e-11 seq6287 84.2 2e-11 seq5369 84.2 2e-11 seq37696 82.4 6e-11 seq30079 82.4 6e-11 seq6377 82.4 6e-11 seq5713 82.4 6e-11 >seq37697 Length=33129 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| |||||||| ||||| || ||| ||| ||| | || Sbjct 22691 ATGCAAATCTTTGTGAAAACCTTGACGGGAAAAACTATCACCCTGGAAGTGGAGAGCTCA 22750 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || || || || || ||| | || ||||| Sbjct 22751 GACACCATTGATAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAG 22810 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || || || |||||||| ||| |||||||||| || Sbjct 22811 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACTCTGGCCGATTATAAC 22870 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| |||||||||||||| || ||||| Sbjct 22871 ATTCAGAAGGAATCTACTCTGCATCTGGTG 22900 >seq352428 Length=123253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || || ||||| || |||||| || || | || ||||| || ||||| | ||| Sbjct 69880 GACAAGGAGGGTGTCCCTCCAGATCAGCAGCGATTAATATTTGCTGGAAAACAGCTAGAA 69939 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | || ||||| ||||||||||||||||| ||||||||| |||| || Sbjct 69940 GATGGGCGCACTCTAGCAGATTATAATATTCAAAAGGAATCAACTCTTCACTTGGTTTTG 69999 Query 25248 CGATTACGAGGAGG 25261 || ||| | ||||| Sbjct 70000 CGGTTAAGGGGAGG 70013 >seq272785 Length=230337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| || || | || ||||| || ||||| | |||||| ||| | || || Sbjct 18885 AGATCAGCAGCGATTAATATTTGCTGGAAAACAGCTAGAAGATGGGCGCACTCTAGCGGA 18944 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| ||||||||||| ||||||||| |||| || || ||| ||||||| Sbjct 18945 TTACAATATCCAAAAGGAATCAACTCTTCACTTGGTTTTGCGGTTAAGAGGAGG 18998 >seq99438 Length=371102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| |||||||| |||||||| || |||||| | |||||| | ||| | || ||| Sbjct 358754 GATCAGCAAAGACTGATCTTTGCTGGGAAACAACTTGAAGATGGAAGGACTCTTGCAGAT 358813 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCA 25237 ||||||||| | ||||||||||| ||||| Sbjct 358814 TACAATATTAAGAAGGAATCTACCCTTCA 358842 >seq74129 Length=283392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | ||| ||||||||| | || |||||||| ||||| || | ||| Sbjct 223077 GACAAGGAAGGTATACCCCCCGATCAACAACGCCTGATCTTTGCTGGCAAGCAGCTCGAA 223136 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | |||||||||||||| ||||||||||| || || ||| Sbjct 223137 GATGGCCGAACCCTTGCCGATTACAATATCCAAAAGGAATCGACCCTGCAC 223187 >seq6287 Length=202565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | ||| || || || || |||||||| || || || || |||| Sbjct 72636 GATAAGGAAGGAATTCCCCCTGACCAGCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAG 72695 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || || |||| ||||||||||||||||||||||| || || || ||||| | Sbjct 72696 GATGGCAGGACCTTGGCTGATTACAATATTCAAAAGGAATCGACCCTGCATTTGGTGCTT 72755 Query 25248 CGATTACGAGGAGG 25261 || || ||||||| Sbjct 72756 CGTCTAAGAGGAGG 72769 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || |||| || ||||||||||| ||| |||| | | Sbjct 72771 ATGCAAATCTTTGTGAAGACCCTGACAGGTAAAACCATTACTCTGGAAGTGGAAAGCTCG 72830 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||||| || || || || | || || || Sbjct 72831 GACACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGAATTCCACCTGACCAG 72890 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || || |||||||| ||| |||||||||||||| Sbjct 72891 CAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACTCTGGCCGATTACAAT 72950 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| |||||||| || |||||| ||||| Sbjct 72951 ATTCAGAAGGAATCGACCCTTCACCTGGTG 72980 >seq5369 Length=633823 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| ||||||| | || ||||| || ||||| ||| ||| | | Sbjct 631628 ATGCAAATATTTGTCAAAACTCTCACTGGCAAGACTATTACTTTGGAAGTTGAAAGCTCG 631569 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| || || || || || ||| | ||| ||||| Sbjct 631568 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGATCAG 631509 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | ||||||||||| || || ||| |||||||| ||| ||||||| |||||| Sbjct 631508 CAGCGTCTTATCTTTGCTGGAAAGCAACTGGAAGATGGTCGAACATTGGCCGACTACAAT 631449 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 || || |||||||| || |||||| Sbjct 631448 ATCCAGAAGGAATCCACCCTTCAC 631425 >seq37696 Length=25399 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||| |||| || | ||||| |||||||| ||||| || ||| ||| ||| | || Sbjct 18453 ATGAAAATCTTTGTGAAAACCTTGACGGGAAAAACTATCACCCTGGAAGTGGAGAGCTCA 18512 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || || || || || ||| | || ||||| Sbjct 18513 GACACCATTGATAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAG 18572 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || || || |||||||| ||| |||||||||| || Sbjct 18573 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACTCTGGCCGATTATAAC 18632 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| |||||||||||||| || ||||| Sbjct 18633 ATTCAGAAGGAATCTACTCTGCATCTGGTG 18662 >seq30079 Length=424873 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | ||| ||||||||| | || || ||||| ||||| ||| | ||| Sbjct 365661 GACAAGGAAGGTATACCCCCTGATCAACAATGCCTGATATTTGCTGGCAAGCAACTTGAA 365720 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| | | |||||||||||| ||||||||||| || || ||| | || | Sbjct 365721 GATGGCTGAACCCTTGTCGATTACAATATCCAAAAGGAATCGACCCTACACCTTGTCCTC 365780 Query 25248 CGATTACGAGGAGGG 25262 || || |||| ||| Sbjct 365781 CGTTTGAGAGGTGGG 365795 >seq6377 Length=1564332 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || ||||||| ||||||||||||| || || ||| ||| | | Sbjct 1323178 ATGCAGATCTTTGTCAAAACCCTGACGGGCAAAACAATCACTCTGGAAGTTGAAAGCTCT 1323237 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| |||||| || || ||||| | || ||||| Sbjct 1323238 GACACAATTGACAATGTGAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAG 1323297 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || ||||| | || ||| ||| | ||||||||||| Sbjct 1323298 CAGAGGCTGATCTTTGCTGGAAAACAGCTCGAGGATGGACGCACTCTCGCCGATTACAAC 1323357 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || || |||||||| ||||||||| | || | || | |||||||| Sbjct 1323358 ATCCAGAAGGAATCAACTCTTCACCTTGTTCTCCGTCTCAGAGGAGGG 1323405 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || ||||||| |||| |||||||| || || ||| ||| | | Sbjct 1467660 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAAACAATCACTCTGGAAGTCGAAAGCTCT 1467601 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| |||||| || || ||||| | || ||||| Sbjct 1467600 GACACAATTGACAACGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAG 1467541 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || ||||| | |||||| ||| | ||||||||||| Sbjct 1467540 CAGAGGCTGATCTTTGCTGGAAAACAGCTCGAAGATGGACGCACTCTCGCCGATTACAAC 1467481 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || || |||||||| ||||||||| | || | || | |||||||| Sbjct 1467480 ATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTCAGAGGAGGG 1467433 >seq5713 Length=447580 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||| | || || ||||||||||| ||||| | | ||| ||| | Sbjct 301941 AAGATGCAGATCTTCGTAAAGACCTTGACGGGCAAGACCATAAGCTTAGAAGTTGAAAGC 301882 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 || || | | | || | ||| |||||| || | |||||| | | | || Sbjct 301881 AGTGATACAATCGACAATGTGAAGGCAAAAATCTAGGACAGAGAAGGGATCTCGCTCGAC 301822 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || ||| || || |||||| ||||||||||||||||| | ||| |||| |||||| Sbjct 301821 CAGCAACATCTGATATTTGCGAGCAAACAATTGGAAGATGGCCGCACTCTGGCAGATTAC 301762 Query 25212 AATATTCAAAAGGAATCTAC 25231 ||||||||||| || || || Sbjct 301761 AATATTCAAAAAGAGTCAAC 301742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 389503304103158