Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq99438 104 3e-17 seq136844 98.7 1e-15 seq72226 89.7 7e-13 seq190644 86.0 9e-12 seq328 86.0 9e-12 seq620036 84.2 3e-11 seq562416 84.2 3e-11 seq352428 84.2 3e-11 seq23608 84.2 3e-11 seq10794 84.2 3e-11 >seq99438 Length=371102 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 |||||||| || ||||| ||||||| |||||| || | ||| || | |||||| ||| Sbjct 358836 GTAGATTCCTTCTTAATATTGTAATCTGCAAGAGTCCTTCCATCTTCAAGTTGTTTCCCA 358777 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||| ||||||||||||||||||||| || || ||||| || Sbjct 358776 GCAAAGATCAGTCTTTGCTGATCCGGAGGAATCCCCTCCTTATCCTG 358730 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | | |||| || | |||||||||||| ||||| ||||| | Sbjct 358184 TTCCGCCTCTGAGACGAAGGACCAGGTGAAGAGTAGATTCTTTTTTAATATTGTAATCAG 358125 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || | | ||| || || || ||||||||||| || | |||||||||| | || | Sbjct 358124 CAAGGGTCCGTCCATCCTCCAACTGCTTTCCAGCAAATATGAGTCTTTGCTGAACAGGGG 358065 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || ||||| Sbjct 358064 GAATGCCTTCCTTGTCTTG 358046 >seq136844 Length=297809 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||| |||| ||| || ||||| ||||| ||||| | Sbjct 119808 CCACCTCTCAGACGAAGAACCAGGTGTAGAGTTGACTCTTTCTGAATATTGTAATCAGCC 119867 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || || || || |||||||||||||| | |||||| || |||||| Sbjct 119868 AGAGTTCTCCCATCCTCCAACTGCTTGCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGA 119927 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || |||||||| Sbjct 119928 ATGCCCTCCTTATCTTG 119944 >seq72226 Length=372471 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTT-AGATATATTATAATCTGA 146109 ||||||||||| | | |||| |||| ||| || ||||| ||| |||| |||| | Sbjct 109010 CCACCTCTAAGACGAAGAACCAGGTGTAGAGTTGACTCTTTCTGAT-TATTGTAATAAGC 109068 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | ||| || || || || |||||||||||||| ||| || || ||||| Sbjct 109069 CAGAGTTCTCCCATCCTCCAACTGCTTGCCAGCAAAAATCAAATGTTGTTGGTCAGGAGG 109128 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| || || |||||||| Sbjct 109129 AATACCCTCCTTATCTTG 109146 >seq190644 Length=148340 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | || |||| || ||| || | ||| |||||||||||||| | || Sbjct 80323 ATGTTATAATCGGCCAGGGTTCGGCCATCCTCCAGTTGCTTTCCAGCAAAAATGAGCCTC 80382 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||| ||||| |||||||| Sbjct 80383 TGCTGATCAGGAGGAATACCTTCCTTATCTTG 80414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| ||||| || | | || | || | ||||||||| ||| || || ||||||||| Sbjct 81003 TTCCTCCTCTGAGGCGGAGGACGAGGTGAAGAGTAGATTCCTTTTGA-ATGTTATAATCT 81061 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| || | ||||||||||| || || | || |||||||| ||| Sbjct 81062 GCTAGTGTTCGGCCATCCTCAAGCTGTTTTCCAGCGAATATGAGCCTCTGCTGATCAGGA 81121 Query 146168 GGAATTCCTTCTTTATCTTG 146187 |||||||| || || || || Sbjct 81122 GGAATTCCCTCCTTGTCCTG 81141 >seq328 Length=599988 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||||| || |||| || ||| | | || ||||| |||||||| | || | Sbjct 362231 ATATTATAATCTGGGAGGGTTCAGCCATCTTGCAGCTGCTTTCCCGCAAAAATGAGTCGT 362290 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || |||||||| |||||||||||||| Sbjct 362291 TGCTGGTCAGGAGGAATACCTTCTTTATCTTG 362322 >seq620036 Length=34888 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 || ||||| ||| || ||||||||||||| || |||| || ||| || | |||||||| Sbjct 32302 GTGGATTCCTTTTGA-ATATTATAATCTGGGAGGGTTCAGCCATCTTCCAGCTGTTTTCC 32360 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| | || |||| ||| ||||||| | |||||||||||| Sbjct 32361 CGCAAAAATGAGTCGCTGCTAATCACGAGGAATACTTTCTTTATCTTG 32408 >seq562416 Length=95391 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 146099 TTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGC 146158 |||||||| | || |||| || ||| || ||||| || ||||||||||| | || ||| Sbjct 54137 TTATAATCGGCCAGGGTTCGGCCATCCTCCAATTGCTTGCCAGCAAAAATGAGCCTCTGC 54078 Query 146159 TGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| ||||| |||||||| Sbjct 54077 TGATCAGGAGGAATACCTTCCTTATCTTG 54049 >seq352428 Length=123253 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || ||||| || | ||| ||||| ||| || ||||||||||||| ||||| | | ||| Sbjct 69998 AAAACCAAGTGAAGAGTTGATTCCTTTTGA-ATATTATAATCTGCTAGAGTGCGCCCATC 69940 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 |||| |||||||||||||| || |||| |||||||| ||||| | || || || || Sbjct 69939 TTCTAGCTGTTTTCCAGCAAATATTAATCGCTGCTGATCTGGAGGGACACCCTCCTTGTC 69880 Query 146185 TTG 146187 || Sbjct 69879 CTG 69877 >seq23608 Length=1529151 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||||| || ||| |||| | ||| || | |||||||||||||||||| | ||| Sbjct 310407 ATGTTATAATATGCAAGGGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAAATAAGCCTT 310348 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATC 146184 |||||||| ||||||||||||| || || Sbjct 310347 TGCTGATCAAGAGGAATTCCTTCCTTGTC 310319 >seq10794 Length=18622 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || ||||| || | ||| ||||| ||| || ||||||||||||| ||||| | | ||| Sbjct 10506 AAAACCAAGTGAAGAGTTGATTCCTTTCGA-ATATTATAATCTGCTAGAGTGCGCCCATC 10448 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 |||| ||||||| |||||| || |||| |||||||| ||||| || || || || || Sbjct 10447 TTCTAGCTGTTTTCTAGCAAATATTAATCCCTGCTGATCTGGAGGGATACCCTCCTTGTC 10388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 703997776234240