Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq562416 107 1e-18 seq48357 98.7 7e-16 seq1025 96.9 2e-15 seq190644 93.3 3e-14 seq68007 89.7 4e-13 seq6377 89.7 4e-13 seq23608 86.0 5e-12 seq81466 82.4 5e-11 >seq562416 Length=95391 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || ||||||||||||||||||||||||||| Sbjct 53957 CCACCACGGAGGCGAAGGACAAGATGCAGCGTAGATTCTTTTTGAATGTTGTAGTCGGCC 53898 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | ||| || || ||| |||| | || || ||||| || Sbjct 53897 AGAGTCCTCCCATCTTCAAGTTGCTTCCCTGCAAAGATCAATCGCTGCTGATCGGGAGGA 53838 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | | |||||||| ||||| |||||| | ||| |||||| | |||| | Sbjct 53837 ATCCTCTCCTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGACT 53778 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| |||| ||||||| ||||| ||||| || ||||| Sbjct 53777 TCAAGCGTGATTGTTTTTCCGGTCAGGGTTTTGACAAAGATCTGCAT 53731 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| || |||| ||| || ||||||| ||| | ||| |||||||| Sbjct 54162 GTGAAGGGTGGATTCCTTCTGAACGTTATAATCGGCCAGGGTTCGGCCATCCTCCAATTG 54103 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||||| ||| | || || || || ||||| || | ||||||||||| ||||| Sbjct 54102 CTTGCCAGCAAAAATGAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCTTGAATTT- 54044 Query 18242 TTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | || ||||| | ||| || ||| | ||| || | |||||| | ||||| | Sbjct 54043 TAGCTTTGACATTATCAATCGTATCAGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCTG 53984 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || ||||| || ||||| Sbjct 53983 TCAACGTCTTCACAAATATCTGCAT 53959 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || ||||| || |||||||| || || || | ||| | ||| Sbjct 18503 AGGACGAGGTGAAGAGTGGATTCCTTCTGAATGTTATAATCTGCGAGGGTTCGGCCATCC 18444 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| ||| | || || || |||||||| ||| | || ||||| || Sbjct 18443 TCAAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGATCAGGGGGAATTCCCTCCTTGTCC 18384 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| |||||| | |||| || | || ||| || Sbjct 18383 TGGATCTTCGCCTTTACATTATCAATAGTGTCTGAGCTCTCGACCTCGAGAGTTATGGTT 18324 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCTTATAAA 18342 || ||||||||||| || ||||| || |||| |||| |||||| | ||| Sbjct 18323 TTTCCGGTCAATGTCTTCACAAATATCTGCA-TTTTGAACTCTAAAAAA 18276 >seq48357 Length=423913 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || || | || || || || || ||||||||||| ||||||||| Sbjct 187680 CCACCACGGAGCCTTAGGACAAGATGCAGGGTGGACTCCTTTTGAATGTTATAGTCGGCC 187621 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | ||| || |||||| |||| | ||| || ||||| || Sbjct 187620 AGAGTCCTCCCATCTTCAAGTTGCTTCCCCGCAAAGATCAATCTCTGCTGATCAGGAGGA 187561 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || || || || || | ||| || | ||| ||| ||| | ||| | Sbjct 187560 ATCCCCTCTTTGTCCTGGATCTTCGCCTTCACATTATCAATAGTATCAGAGCTCTCAACT 187501 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | |||||||||| ||||| |||||||||||||| Sbjct 187500 TCAAGGGTGATGGTCTTGCCGGTCAGAGTTTTGACAAAAATTTGCAT 187454 >seq1025 Length=463399 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | |||||| || ||||| || || || ||||||||||| | |||| || ||| Sbjct 116142 AAGGACAAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGCGAGTGTTCGACCATC 116201 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||||||| || ||| ||||||| | || ||||| ||| | ||| ||||| || Sbjct 116202 TTCCAATTGTTTTCCGGCAAAGATAAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTC 116261 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | ||| || | ||| |||||| | ||| ||| | ||||| | Sbjct 116262 TTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCAACTTCCAATGTGATTGT 116321 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||||| ||||| || ||||| Sbjct 116322 CTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 116354 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| || || || ||||||||||| | |||| || |||||||||||| Sbjct 115923 GTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGCAAGTGTTCGACCATCTTCCAATTG 115982 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| ||||||| | || || || ||| | ||| ||||| || || | Sbjct 115983 TTTTCCGGCAAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 116042 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | ||| |||||| | ||| ||| | ||||| | ||||| || Sbjct 116043 GGCCTTCACATTGTCAATGGTGTCAGAGCTCTCAACTTCCAATGTGATTGTCTTGCCAGT 116102 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | ||||| ||||| || ||||| Sbjct 116103 GAGGGTTTTCACAAAGATCTGCAT 116126 >seq190644 Length=148340 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTG------AATGTTGTAG 18152 || || || || | ||| || | || || || ||||||||||| ||| |||||| Sbjct 80544 CCACCACGGAGGCGAAGGACAAGATGCAGCGTAGATTCTTTTTGNNNNNNAATATTGTAG 80603 Query 18153 TCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212 ||||||| || | | |||||| | ||| || || ||| |||| | ||| || ||||| Sbjct 80604 TCGGCCAGAGTCCTCCCATCTTCAAGTTGCTTCCCTGCAAAGATCAATCTCTGCTGATCG 80663 Query 18213 ACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC 18272 || | || |||||||| ||||| |||||| | ||| |||||| | | Sbjct 80664 GGAGGAATCCCCTCCTTATCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTC 80723 Query 18273 TCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| ||||| |||| ||||||| ||||| ||||| || ||||| Sbjct 80724 TCAACTTCAAGCGTGATTGTTTTTCCGGTCAGGGTTTTGACAAAGATCTGCAT 80776 >seq68007 Length=164494 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | ||| | ||| || | |||||| || ||||| || | || |||||||||| Sbjct 78590 CCACCTCTTAGACGAAGGACAAGGTGAAGGGTCGATTCCTTCTAGATATTGTAGTCGGAG 78531 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 |||||| || ||||||||||||||| || ||| ||||||| | || ||||| ||| Sbjct 78530 ATTGTTCGACCATCTTCCAATTGTTTTCCAGCAAAGATAAGACCCTGCTGATCGGGGGGG 78471 Query 18219 ACGCCTTCCTTATC 18232 | ||| ||||| || Sbjct 78470 ATGCCCTCCTTGTC 78457 >seq6377 Length=1564332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || ||||| || || |||||||| ||||| | || | |||| Sbjct 1467449 AGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTGCGTCCATCT 1467508 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| |||| || || || ||||| || | |||||||| || Sbjct 1467509 TCGAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGATCGGGTGGAATCCCTTCCTTGTCT 1467568 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| |||||| | ||| ||| | ||||| || Sbjct 1467569 TGAATTTTAGCCTTGACGTTGTCAATTGTGTCAGAGCTTTCGACTTCCAGAGTGATTGTT 1467628 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| ||||| ||||| || ||||| Sbjct 1467629 TTGCCGGTCAGGGTTTTGACAAAGATCTGCAT 1467660 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || | ||| || | |||||| || ||||| || |||||||| ||||| || Sbjct 1322611 CCTCCTCTGAGACGAAGGACAAGGTGAAGAGTGGATTCCTTCTGAATGTTATAGTCTGCG 1322670 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | |||||||| ||| ||||||| || || ||||| || Sbjct 1322671 AGGGTTCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTCTGCTGATCAGGAGGA 1322730 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | ||| || | ||| |||||| | ||| Sbjct 1322731 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATAGTGTCCGAGCTCTCCACC 1322790 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCT 18336 |||| || ||| |||| ||||||||||| || || || || |||| |||| |||||| Sbjct 1322791 TCAAGAGTTATGGTTTTTCCGGTCAATGTCTTAACGAATATCTGCA-TTTTGAACTCT 1322847 >seq23608 Length=1529151 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || ||||||||||||||||||||||||||| Sbjct 17383 CCACCACGGAGGCGAAGGACAAGATGCAGCGTAGATTCTTTTTGAATGTTGTAGTCGGCC 17324 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | ||| || || ||| |||| | ||| || ||||| || Sbjct 17323 AGAGTCCTCCCATCTTCAAGTTGCTTCCCTGCAAAGATCAATCTCTGCTGATCTGGAGGA 17264 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || ||| | ||| || | ||| ||||| | ||| | Sbjct 17263 ATCCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCAATGGTGTCTGAGCTCTCAACT 17204 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || | |||||||||| ||||| ||||| || ||||| Sbjct 17203 TCGAGCGTAATTGTCTTGCCGGTCAGGGTTTTGACAAAGATCTGCAT 17157 >seq81466 Length=556026 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||| | ||| |||| || || || ||||| |||||||| ||||| || ||| Sbjct 450616 CCTCCTCTTAGACGAAGCACCAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCAGCC 450557 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| |||| || || || | ||||||| || || || || ||| Sbjct 450556 AAGGTCCTGCCATCCTCCAGCTGCTTACCAGTGAAGATAAGCCTCTGCTGGTCAGGGGGA 450497 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC---G 18275 | ||||||||||| || | |||||| | ||| |||| ||| |||| Sbjct 450496 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGT--CCGAGCTCTCAA 450439 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||| || || | || || || | |||||||||||| |||||||| Sbjct 450438 CTTTCAAT-GTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 450390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359680848029265