Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq12734 100 2e-16 seq25406 82.4 6e-11 >seq12734 Length=494798 Score = 100 bits (110), Expect = 2e-16 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||||||| | |||||||| || || || |||| || || |||| Sbjct 183037 ATGCAGATCTTTGTTAAAACCCTTACCGGCAAGACAATCACTCTCGAGGTTGA---GAGC 183093 Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||| | | || | ||| |||| || || | || |||||| | || |||| Sbjct 183094 TCTGACACTATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCTGAC 183153 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | |||| ||| || ||||| |||||||| | || || ||||||| Sbjct 183154 CAGCAGCGTCTGATATTTGCCGGAAAACAGCTGGAAGACGGCCGTACCCTGGCCGATTAC 183213 Query 25009 AGCATACAGAAAGAGGCCACGCTTCAT 25035 | ||| ||||| || ||||||| ||| Sbjct 183214 AACATCCAGAAGGAATCCACGCTGCAT 183240 >seq25406 Length=689335 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||| |||| || || || ||||| || |||| || |||||| | || || ||| ||| Sbjct 108228 ATGTAGATCTTCGTAAAGACCTTGACAAGCAAGACCATAACCTTAGAAGTTGAAAGCAGC 108287 Query 24892 GACAGTGTA---GAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || |||| || | ||| |||| ||||| | |||||||| | || ||| Sbjct 108288 GA---TGTAATCGACAATGTGAAGGCCAAAATCTAGGACAAAGAAGGGATCCCACCCGAC 108344 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 || ||| || | |||| |||||||||||| |||||||| | ||| || |||||| Sbjct 108345 CAACAATGTCTGATATTTGCGGGCAAACAGATGGAAGATAGCTGCACTCTGGCAGATTAC 108404 Query 25009 AGCATACAGAAAGAG 25023 | ||| ||||||||| Sbjct 108405 AACATTCAGAAAGAG 108419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396621371246240