Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17]
4,253,097 sequences; 27,602,653,187 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq56275 82.4 9e-11
seq16500 82.4 9e-11
>seq56275
Length=114807
Score = 82.4 bits (90), Expect = 9e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
|||||| ||||||| || || ||||| || ||||||||||| | || | | ||
Sbjct 25676 AGTTCCACCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACGCTGTGACATCAAATG 25617
Query 63722 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63780
|| |||| ||||| || || || || | ||| |||||||| || | || | ||| |
Sbjct 25616 ATAAGTCTTGATAGCAGATTCGATGTCATCCTTG-TGAATTCCCACAGAAACCCTCATCA 25558
Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840
|||| || ||||| || || |||| || | ||| ||||||||||| | ||||
Sbjct 25557 ACATATGTTGAGGCCTCTCCACAACAACCCCATTCAATTTTAACAAGTAGGACCTCTCCA 25498
Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874
| || || || ||||| |||| ||| ||| ||
Sbjct 25497 ATGTCTTGAAGCCAAAGTAGTCATATTCAAAATC 25464
>seq16500
Length=780930
Score = 82.4 bits (90), Expect = 9e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
|||||| |||||||| || || ||||| || ||||||||||| | |||| | ||
Sbjct 148924 AGTTCCAGCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACACTATGAAATCAAATG 148983
Query 63722 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63780
|| |||| ||||| || || || || | ||| || |||| || | || | ||| |
Sbjct 148984 ATAAGTCTTGATAGCAGATTCAATGTCATCCTTG-TGGATTCTCACAGAAACCCTCATCA 149042
Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840
|||| || ||||| || || ||||| || | ||| ||||||||| | | ||||
Sbjct 149043 ACATATGTTGAGGCCTCTCCACAATAACCCCATTCAATTTTAACAAGTAGTACCTCTCCA 149102
Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874
| || || || ||||| |||| ||| ||| ||
Sbjct 149103 ATGTCTTGAAGCCAAATTAGTCATATTCAAAATC 149136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596334158186160
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |