Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq369028 100 4e-16 seq56275 89.7 7e-13 >seq369028 Length=352451 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | ||| || | ||| | || ||||||||||| | |||||| Sbjct 63457 TCCACCTTGATCAACATAACGAGCAGTATCATTGAATACCCTCAACATTGGCACAATACC 63516 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || |||||| || | | |||||||| ||| | ||| Sbjct 63517 ATTCGATGTGCCATTAGTTCCTCGGATATAACTACTGGTTGCACGAATGTTATGTACTGA 63576 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| | ||| || || ||| |||| || ||| |||| |||||||| || Sbjct 63577 AACACCAAGTCCTCCAGCTGATTTGCTTATTACGGCACATTCCTTTAGAGTATCATATAT 63636 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| |||| || || || |||||| Sbjct 63637 CCCCTCAATGCTATCATCTTTCATACAAACAAGGAAGCAGCTA 63679 >seq56275 Length=114807 Score = 89.7 bits (98), Expect = 7e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 || |||| |||||| ||||||| || | ||| || | |||| | || | ||||||||| Sbjct 26238 TCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACGCAACATTGG 26179 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 | ||||||||| ||||| ||||| || || || || || | | ||||||||| Sbjct 26178 CACAATACCATTTGATGTGCCATTTGTTCCACGTATGTAACTATTTGTTGAACGAATATT 26119 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 | || || | || || || ||||| ||| || | || ||| ||| | || Sbjct 26118 ATGGATCGAAACTCCAATGCCTCCTGCTGATTTGCTAATCACAGCACATTCTTTGAGGGT 26059 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 |||||| || || || ||||||||||| |||| | ||||| |||||| Sbjct 26058 ATCATAAATACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 26007 Score = 86.0 bits (94), Expect = 9e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| ||||||| || || ||||| || ||||||||||| | |||| | || Sbjct 25676 AGTTCCACCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACGCTGTGACATCAAATG 25617 Query 80394 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTA 80452 || |||| ||||| ||||| || || | ||| |||||||| || | || | ||| | Sbjct 25616 ATAAGTCTTGATAGCAGATTCGATGTCATCCTTG-TGAATTCCCACAGAAACCCTCATCA 25558 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||| || ||||| || || || | ||| | ||| |||||||| || | |||| Sbjct 25557 ACATATGTTGAGGCCTCTCCACAACAACCCCATTCAATTTTAACAAGTAGGACCTCTCCA 25498 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 | || || || ||||| |||| ||| ||| || Sbjct 25497 ATGTCTTGAAGCCAAAGTAGTCATATTCAAAATC 25464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 680082964019080