Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq56275 91.5 2e-13 seq171456 89.7 7e-13 seq852351 87.8 2e-12 seq369028 87.8 2e-12 seq16500 86.0 8e-12 seq97185 82.4 1e-10 >seq56275 Length=114807 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||||| || || ||||| || ||||||||||| | |||| | || Sbjct 25676 AGTTCCACCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACGCTGTGACATCAAATG 25617 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 || |||| ||||| ||||| || || | ||| || ||||| || | || | ||| | Sbjct 25616 ATAAGTCTTGATAGCAGATTCGATGTCATCCTTG-TGAATTCCCACAGAAACCCTCATCA 25558 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||| ||||| || || || | ||| | ||| ||||||||||| | |||| Sbjct 25557 ACATATGTTGAGGCCTCTCCACAACAACCCCATTCAATTTTAACAAGTAGGACCTCTCCA 25498 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 | || || || ||||| |||| ||| ||| || Sbjct 25497 ATGTCTTGAAGCCAAAGTAGTCATATTCAAAATC 25464 >seq171456 Length=485218 Score = 89.7 bits (98), Expect = 7e-13 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||||| || | |||| || ||||||||||| | || |||| | ||| Sbjct 286911 AGTTCCACCATTAAACAAACTTAGAGATGCATGCGTAAACCAATGTTGTGACATCAAATT 286852 Query 72477 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCAT-T 72534 || |||| |||| ||||| || || | ||| || ||||||| | || | ||| | Sbjct 286851 ATAAGTCTTGATAGTAGATTCAATGTCATCCTTG-TGGATTCCTATAGAAACCCTCATCT 286793 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 |||||||| | ||| ||||| || | ||| | ||| ||||||||||| | ||| Sbjct 286792 AACATATGTTTAGGCCTTTCCACAACAACCCCATTCAATTTTAACAAGTAGGACCTCTCC 286733 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 || || || || ||||| |||| ||| ||| || Sbjct 286732 AATGTCTTGAAGCCAAATTAGTCATATTCAAAATC 286698 >seq852351 Length=70276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||||| || || ||||| || ||||||||||| || |||| | || Sbjct 35397 AGTTCCACCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACGTTGTGACATCAAATG 35456 Query 72477 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTA 72535 || |||| ||||| ||||| || || | ||| || ||||| || || | ||| | Sbjct 35457 ATAAGTCTTGATAGCAGATTCAATGTCATCCTTG-TGGATTCCCACATAAACCCTCATCA 35515 Query 72536 ACATATGCTGAGGTCTTTC---AACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTT 72592 ||||||| ||||| || || ||| | | ||| | ||| ||||||||||| | | Sbjct 35516 ACATATGTTGAGGCCTCTCCATAACAACC---CCATTCAATTTTAACAAGTAGGACCTCT 35572 Query 72593 CCAAAGTTTTAAAACCAAAATAGT 72616 |||| || || || ||||| |||| Sbjct 35573 CCAATGTATTGAATCCAAAGTAGT 35596 >seq369028 Length=352451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||| | || | ||| || | ||| | || ||||||||||| | |||||| Sbjct 63457 TCCACCTTGATCAACATAACGAGCAGTATCATTGAATACCCTCAACATTGGCACAATACC 63516 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || |||||| || | | |||||||| || | ||| Sbjct 63517 ATTCGATGTGCCATTAGTTCCTCGGATATAACTACTGGTTGCACGAATGTTATGTACTGA 63576 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| | ||| || || ||| |||| || ||| |||| |||||||| || Sbjct 63577 AACACCAAGTCCTCCAGCTGATTTGCTTATTACGGCACATTCCTTTAGAGTATCATATAT 63636 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| || |||||||| |||| || || || |||||| Sbjct 63637 CCCCTCAATGCTATCATCTTTCATACAAACAAGGAAGCAGCTA 63679 >seq16500 Length=780930 Score = 86.0 bits (94), Expect = 8e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| || || ||||| || ||||||||||| | || | | || Sbjct 148924 AGTTCCAGCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACACTATGAAATCAAATG 148983 Query 72477 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTA 72535 || |||| ||||| ||||| || || | ||| || |||| || | || | ||| | Sbjct 148984 ATAAGTCTTGATAGCAGATTCAATGTCATCCTTG-TGGATTCTCACAGAAACCCTCATCA 149042 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||| ||||| || || || || ||| | ||| ||||||||| | | |||| Sbjct 149043 ACATATGTTGAGGCCTCTCCACAATAACCCCATTCAATTTTAACAAGTAGTACCTCTCCA 149102 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 | || || || ||||| |||| ||| ||| || Sbjct 149103 ATGTCTTGAAGCCAAATTAGTCATATTCAAAATC 149136 >seq97185 Length=778803 Score = 82.4 bits (90), Expect = 1e-10 Identities = 140/200 (70%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||| || || ||||| || ||||||||||| || |||| | || Sbjct 83983 AGTTCCACCATTAAGCAAAGTTGGAGATGCATGCGTAAACCAACGTTGTGACATCAAATG 84042 Query 72477 GTACGTCTCAATAGCTGATTCTAT--ATCCCATTGATGTATTCCTACCGCGACACGCATT 72534 || |||| ||||| ||||| || |||| ||| || ||||| || || | ||| Sbjct 84043 ATAAGTCTTGATAGCAGATTCAATTCATCC--TTG-TGGATTCCCACATAAACCCTCATC 84099 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 |||||||| ||||| || || || | ||| | ||| |||||||| ||| | ||| Sbjct 84100 AACATATGTTGAGGCCTCTCCACAACAACCCCATTCAATTTTAACAAGTACGATCTCTCC 84159 Query 72595 AAAGTTTTAAAACCAAAATA 72614 || || || || ||||| || Sbjct 84160 AATGTCTTGAAGCCAAAGTA 84179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635458948523720