Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5369 96.9 3e-15 seq165262 95.1 1e-14 seq1025 95.1 1e-14 seq48357 89.7 4e-13 seq12734 87.8 1e-12 seq47591 86.0 5e-12 seq6925 86.0 5e-12 seq6287 86.0 5e-12 >seq5369 Length=633823 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||||| ||||| ||||| ||||||||||| || |||| ||| | |||| || Sbjct 232911 CACGAGGTGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCCAGGGTTCGGCCGTCTTC 232970 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || |||||| | || || | ||||||||| ||| | ||| || ||||| Sbjct 232971 TAGCTGCTTTCCCGCAAAGATCAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 233030 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||||| | | | | ||| ||| | || |||| ||| || || || Sbjct 233031 GATCTTGGCCTTTACATTGTCAATAGTGTCGGAACTTTCAACCTCGAGGGTGATCGTCTT 233090 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 ||| || | |||||| ||||| || ||||| || || Sbjct 233091 ACCAGTGAGAGTTTTAACAAAGATCTGCATCTTGAA 233126 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||||| ||||| ||||||||||| || |||| ||| |||| || Sbjct 289152 CACGAGGTGTAGGGTAGATTCCTTCTGAATATTGTAGTCGGCCAGGGTTCGACCGTCTTC 289211 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || |||||| | || || | ||||||||| ||| | ||| || ||||| Sbjct 289212 TAGCTGCTTTCCCGCAAAGATCAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 289271 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||||| | | | | ||| ||| || |||| |||||| || || Sbjct 289272 GATCTTGGCCTTTACATTGTCAATAGTGTCGGAGCTTTCAACCTCGAGGGTAATCGTCTT 289331 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | |||||| ||||| || ||||| Sbjct 289332 ACCAGTGAGAGTTTTAACAAAGATCTGCAT 289361 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| || || ||||| |||||||||||||| |||| ||| | | || || Sbjct 370252 CACAAGGTGCAAGGTCGATTCCTTCTGAATATTGTAATCAGCCAATGTCCGGCCATCTTC 370311 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||||| ||||| ||| | ||||| |||||||| || ||| | ||| || ||||| Sbjct 370312 AAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCAGGGGGTATGCCTTCCTTGTC 370368 >seq165262 Length=201129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || || | ||| | |||||||||||| || || || ||||| || | ||| | | ||| Sbjct 58268 AAGACAAGGTGAAGCGTAGACTCCTTCTGGATGTTATAATCGGCGAGAGTTCGGCCATCC 58327 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||||||| ||||| ||| | ||||| ||||||||||| || | || || ||||| Sbjct 58328 TCCAGCTGCTTACCAGCAAATATAAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCC 58387 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || |||||| | | ||| |||||| ||| || | || ||||| Sbjct 58388 TGAATCTTTGCTTTTACATTGTCGATCGTATCGGAGCTCTCAACCTCCAGTGTGATGGTC 58447 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| || || || ||||| || ||||| Sbjct 58448 TTGCCTGTCAACGTCTTCACAAATATCTGCAT 58479 >seq1025 Length=463399 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||| || |||||||||||||| ||||| || |||| || | | ||||| Sbjct 46403 CACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCCAAGGTCCTACCATCCTC 46344 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| ||||||| ||||||||||| || | ||| || ||||| Sbjct 46343 CAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCTGGCGGAATGCCTTCCTTGTCCTG 46284 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTT 19010 || || || || | ||| || || | || ||| ||| | ||||| || | Sbjct 46283 GATCTTGGCCTTGACGTTATCGATGGTGTC-CGAGCTCTCAACTTCCAAAGTAATTGTCT 46225 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| || | ||||||||||| || ||||| Sbjct 46224 TACCAGTCAGGGTTTTGACAAAGATCTGCAT 46194 >seq48357 Length=423913 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||||| || | |||| || |||||||||||||| || || || ||| Sbjct 187680 CCACCACGGAGCCTTAGGACAAGATGCAGGGTGGACTCCTTTTGAATGTTATAGTCGGCC 187621 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || || || || |||||| | || | |||||||||||| || Sbjct 187620 AGAGTCCTCCCATCTTCAAGTTGCTTCCCCGCAAAGATCAATCTCTGCTGATCAGGAGGA 187561 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| || ||| || || | | | |||||| ||| | Sbjct 187560 ATCCCCTCTTTGTCCTGGATCTTCGCCTTCACATTATCAATAGTATCAGAGCTCTCAACT 187501 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | ||||||||||||||||||||| Sbjct 187500 TCAAGGGTGATGGTCTTGCCGGTCAGAGTTTTGACAAAAATTTGCAT 187454 >seq12734 Length=494798 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||| ||||||||||||||||| || |||| ||| | | || ||||||||| Sbjct 183467 TGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGCCAAGGTTCGGCCATCTTCCAGCTGT 183408 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || || | |||||| ||| || | || || ||||| || || Sbjct 183407 TTTCCGGCAAATATTAGACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTA 183348 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | ||| ||||| |||| ||| | || || || ||||| || Sbjct 183347 GCTTTCACATTGTCGATGGTATCTGAGCTCTCCACTTCCAATGTTATCGTCTTACCGGTG 183288 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||||| ||||| || ||||| Sbjct 183287 AGGGTTTTCACAAAGATCTGCAT 183265 >seq47591 Length=204778 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| ||||| || ||||| |||| || | || || Sbjct 43967 CACCAGGTGCAGAGTAGACTCCTTCTGAATGTTATAATCAGCCAGAGTACGTCCATCTTC 43908 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| |||| || |||||||| || || | ||||||||| || Sbjct 43907 CAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCTTTATCCTG 43848 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | | || ||| ||| || | |||||| ||||| Sbjct 43847 AATCTTCGCCTTCACATTATCAATGGTGTCGGAGCTCTCTACCTCCAAGGTAATAGTTTT 43788 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| || || || || || ||||| Sbjct 43787 CCCAGTTAAGGTCTTCACGAAGATCTGCAT 43758 >seq6925 Length=347220 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| ||||| || ||||| |||| || | || || Sbjct 133288 CACCAGGTGCAGAGTAGACTCCTTCTGAATGTTATAATCAGCCAGAGTACGTCCATCTTC 133347 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||||||| ||| |||| || |||||||| || || | ||||| || || Sbjct 133348 CAGCTGTTTACCAGCAAAAATCAGCCTCTGCTGGTCGGGAGGGATACCCTCCTTATCCTG 133407 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||||| || || | | | || ||| ||| || | |||||| ||||| Sbjct 133408 AATTTTCGCCTTCACATTATCAATGGTGTCGGAGCTCTCTACCTCCAAGGTAATAGTTTT 133467 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| || || || ||||| Sbjct 133468 CCCAGTCAAGGTTTTCACGAAGATCTGCAT 133497 >seq6287 Length=202565 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||| || || |||||||||||||||||||| |||| || || | ||||| Sbjct 72752 CACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCCATCCTC 72693 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || | ||||| |||||||| || ||| | || || || || Sbjct 72692 CAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTATCCTG 72633 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTT 19010 || || || || | | | | || || | || ||| ||| | ||||| || | Sbjct 72632 GATCTTGGCCTTGACGTTGTCAATGGTGTC-CGAGCTCTCAACTTCCAGTGTAATTGTCT 72574 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || |||| ||||| ||||| |||||||| Sbjct 72573 TTCCAGTTAGTGTTTTTACAAAGATTTGCAT 72543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393083576579218