Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq108016 98.7 6e-16 seq12734 87.8 1e-12 seq6287 87.8 1e-12 seq1025 87.8 1e-12 >seq108016 Length=449559 Score = 98.7 bits (108), Expect = 6e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| || | |||||||||| |||||||| ||||| |||||||| || | | Sbjct 325490 CCTCCTCTTAGACGAAGGACCAAATGCAGGGTCGACTCCTTTTGGATATTGTAGTCGGCC 325431 Query 33203 AAATTGAGTTGGTCATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTG 33259 || | | |||||| || ||||||||| |||||||| ||||||||||| | | Sbjct 325430 AAGGT---TCTGTCATCTTCAGGTTGCTTTCCGGAAAATATTAGTCGTTGCTGGTCAGGG 325374 Query 33260 GGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGT 33316 || ||||||||||| || | | | ||| || || | | ||| ||||| | Sbjct 325373 GGAATGCCTTCTTTGTCCTGGATCTTGGCC---TTGACATTATCAATGGTGTCCGAGCTC 325317 Query 33317 TGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | ||| |||| ||| || | || || || || ||||| || ||||| ||||| Sbjct 325316 TCAACTTCCAAAGTAATTTTCTTGCCAGTGAGGGTTTTAACAAAAATCTGCAT 325264 >seq12734 Length=494798 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| || | |||| ||||| |||||||| ||||| |||||||| || | | Sbjct 183947 CCTCCTCTTAGACGGAGAACCAGATGCAGGGTCGACTCCTTTTGAATATTGTAGTCGGCC 183888 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | ||| || | |||||||| ||| || | ||| |||||||| | || Sbjct 183887 AAGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGTGGA 183828 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | | ||| || || | | ||| ||||| | | | Sbjct 183827 ATGCCTTCTTTGTCCTGGATCTTGGCC---TTAACATTATCAATGGTGTCCGAGCTCTCA 183771 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| ||| || || || || || || ||||| || ||||||||||| Sbjct 183770 ACTTCCAAAGTAATTGTCTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 183721 >seq6287 Length=202565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| || | ||||||||||| ||||| || ||||| ||||||||||||| | Sbjct 72769 CCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCC 72710 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | || |||| ||||| ||| || || | | |||||||| | ||| Sbjct 72709 AAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 72650 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | | ||| || || | | ||| ||||| | | | Sbjct 72649 ATTCCTTCCTTATCCTGGATCTTGGCC---TTGACGTTGTCAATGGTGTCCGAGCTCTCA 72593 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || ||||| || || |||||||| || |||||||| Sbjct 72592 ACTTCCAGTGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 72543 >seq1025 Length=463399 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 14/216 (6%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG----GTC 33216 |||| ||||| || || || || || || |||||||| | ||| | ||| ||| Sbjct 78969 ACCAGGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCGG-CAA---GGGTTCTGCCGTC 79024 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | ||||||||| ||| |||| |||||||||||| | ||| ||||| ||||| || Sbjct 79025 CTCAAGCTGCTTTCCAGCAAAGATTAGACGTTGCTGGTCAGGGGGAATGCCCTCTTTATC 79084 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| || || | | ||| |||||| | | ||| |||| ||| || Sbjct 79085 CTGGATCTTGGCC---TTCACATTATCAATGGTGTCGGAGCTCTCAACTTCCAAAGTGAT 79141 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| ||||| || || ||||| || ||||| ||||| Sbjct 79142 CGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 79177 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 14/214 (7%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TCATCCA 33221 ||||| || || || || || ||||||||||| | ||| | ||| | || |||| Sbjct 45713 ATGCAGCGTGGATTCCTTCTGAATATTGTAATC-GGCAA---GGGTTCGGCCATCTTCCA 45658 Query 33222 ATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GC 33278 ||||||||| |||||| | ||| || ||||| | ||| |||||||| || || | Sbjct 45657 GCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCAGGGGGGATGCCTTCCTTGTCCTGGA 45598 Query 33279 TAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTT 33338 | ||||| ||||| | | ||| ||||| | | ||| || ||||| || || | Sbjct 45597 TTTTCGCC---TTTACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCT 45541 Query 33339 TTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || ||||| ||||| ||||| || ||||| || Sbjct 45540 TGCCGGTAAGGGTTTTAACGAAGATCTGCATCTT 45507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302253884339106