Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq562416 91.5 1e-13 seq13427 91.5 1e-13 seq235998 82.4 5e-11 >seq562416 Length=95391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| || || ||||| || | || ||||| || |||| | |||||| | Sbjct 54115 CATCCTCCAATTGCTTGCCAGCAAAAATGAGCCTCTGCTGATCAGGAGGAATACCTTCCT 54056 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| |||||| |||||| || ||| ||||| | ||| || || | || | Sbjct 54055 TATCTTGAATTTTAGCTTTGACATTATCAATCGTATCAGAGCTCTCAACCTCCAGAGTGA 53996 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || || || || || |||||||||||||| |||||| Sbjct 53995 TGGTCTTGCCTGTCAACGTCTTCACAAATATCTGCATG 53958 >seq13427 Length=476084 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || || ||||| ||||||||| | |||| |||| |||| || ||||| ||||| Sbjct 233482 TCCTTCTGAATGTTATAATCGGCCAGAGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAG 233423 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC-TGAAATTTTTTGT-TTGACCA 44048 |||| || ||||| || |||| | ||| || || || || | | || || || || Sbjct 233422 ATCAGCCTCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGA--TCTTGGTCTTCACAT 233365 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || ||| || |||| |||||| || | |||||| ||||| || |||| ||| |||| Sbjct 233364 TATCAATGGTGTCTGAGCTCTCCACCTCCAGCGTAATGGTTTTTCCAGTTAGAGTTTTCA 233305 Query 44109 CAAATATTTGCAT 44121 ||||||| ||||| Sbjct 233304 CAAATATCTGCAT 233292 >seq235998 Length=126604 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| ||| ||||| |||| |||| ||| ||||| || |||| | |||||||| Sbjct 85175 CATCTTCCAGTTGCTTTCCCACAAA-ATCAGCCGCTGCTGTTCAGGAGGAATACCTTCTT 85117 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||| || || || | ||| ||||| ||| || || | ||| | Sbjct 85116 TATCTTGAATCTTAGCCTTCACGTTGTCAATCGTATCCAAGCTCTCAACCTCCAGCGTGA 85057 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || ||||| || ||||||||||| |||||||| Sbjct 85056 TGGTCTTTCCGGTCAACGTCTTCACAAACATTTGCAT 85020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336387838030356